Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq664 187 3e-42 seq101 98.7 1e-15 >seq664 Length=348155 Score = 187 bits (206), Expect = 3e-42 Identities = 436/649 (67%), Gaps = 8/649 (1%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||||||||||| || | |||||| || || |||||||| | | |||||| Sbjct 293466 CTGTTCAACGCTGGAACCCCCAAGCCTCAGTTGGCGTCTTGCTTCCTCATCGACATGAAG 293407 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || || |||||||| |||||||| || |||||| || ||| ||||||||| Sbjct 293406 GAGGATAGCATCGACGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGACC 293347 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || || |||||| || | || || | || ||||||| | || | || | Sbjct 293346 GCTGGAGGCATCGGTCTCAA-TGTTC-ACCGCATCCGTGCCACTGGTAGCTACATTGCTG 293289 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| | | || | | || ||||| ||||||| ||||||||| || | Sbjct 293288 GCACCAACGGCACTAGCAACGGCTTGATTCCCATGCTTCGCGTCTACAACAACACTGCGC 293229 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| |||||||||| ||||| ||| | |||||||||||||||||||| | Sbjct 293228 GCTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCTCGAGCCAT 293169 Query 53592 GGCACGCCGACATTATGGAGTTT-CTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | ||||| || || || || ||| || || | || || | Sbjct 293168 GGCACGCCGAC-GTCTTCAGTTTCCTTGATCTTCGCAAGAACCACGGCAAGGAGGAAGTC 293110 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || || |||||||| ||| ||||| |||||||| || ||||||||| || || || Sbjct 293109 CGGGCTCGCGACCTGTTCTAC-GCTCTCTGGATTCCTGATCTCTTCATGAAACGTGTCGA 293051 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || ||| ||| ||| |||||||| ||||||||||| || || | ||| || Sbjct 293050 GCAGAACGGCACCTGGACCCTCATGTGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTTA 292991 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829 || || ||||| | | | || | ||||| |||| ||| | ||| Sbjct 292990 TGGAGACGAGTTCGAGGCTCTTTACGAGCAGTACGAGAAGGAGGGTCGCGGCCGTGAGAC 292931 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| || | || | ||| | || || ||| || |||||| ||||| || | || Sbjct 292930 CGTCCGCGCTCAGAAGCTTTGGTACGCCATTCTCGAGGCCCAGGTCGAGACCGGTAACCC 292871 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| ||||||||| |||| ||||||||||| |||||| Sbjct 292870 CTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 292822 Score = 138 bits (152), Expect = 1e-27 Identities = 306/450 (68%), Gaps = 17/450 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||||||| || || ||||| ||||| ||||| ||||||| | ||| | Sbjct 292296 CGCAACTCTCTGCTCGTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTC 292237 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| ||||||||||||||| | ||||||||| ||||| || || || ||| Sbjct 292236 AACGAGTGTTTCGAGCCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAG 292177 Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 ||| || | || ||| | | ||| |||||||| || | || | |||| Sbjct 292176 TTT--CAGG-TCGTCAACCCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCT 292120 Query 55661 CCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AG 55714 ||||| |||| || || || | ||||| ||| ||||| | | | Sbjct 292119 GATCAGATGAAGAACCGCATCATCGCTTCCAACGGT---TCCATCCAGCAGATCCCCAAC 292063 Query 55715 ATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 ||||| | || | |||||| | | ||| |||||| |||||| || | ||| | | Sbjct 292062 ATTCC-CGACGACATCAAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGCACCAT 292004 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 | | ||| ||| ||||| ||||| | ||| ||||||||||| || || |||||| Sbjct 292003 CGTCCAGATGGCTGCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCA 291944 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| | | ||| | ||| |||| | | |||||||||||| || |||||| || Sbjct 291943 CATGAAAGACCCTACGATGGGCAAGATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGG 291884 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||| || |||||||| || || || Sbjct 291883 TCTCAAGACTGGCATGTACTACCTCCGTAC 291854 >seq101 Length=66550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 327/504 (65%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 53443 CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 ||| ||||| ||||| | ||| ||| || |||| |||| | || |||| || Sbjct 6257 CGTGCGTGCCAACGGGTCGTGCATCGCGGGCACCGACGGGACCGCCAAGGGCATCGGCCC 6316 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| |||||||||||| || | || ||| || ||| |||| | Sbjct 6317 CATGCTGCGCGTCTTCAACGACGCCGCGCGGCTCG--------------GGG--GCGCCA 6360 Query 53563 GGGGTCGT-TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGC 53621 | || | ||| | ||||||| ||||||||||||||||| | | || || ||| | | Sbjct 6361 GCGGCAGCCTCGTCGTCTACCTGGAGCCGTGGCACGCCGATGTCTTTGACTTCCTCAACC 6420 Query 53622 TGCGTCTGAATCAG-GGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTG 53679 || | | | | | | || | || ||| |||| || |||||| ||| || ||||| Sbjct 6421 TGGGCC-GCAGCGGCGGCAAGGATGAGCTGCGGGCACGCGACCTGGCCTAC-GCGCTGTG 6478 Query 53680 GATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCC 53739 | | |||||||| ||||||| ||| || |||||| || ||| ||||||||||| Sbjct 6479 GGTGCCGGACCTGTTCATGCGCCGGGTCGACCAGGACGGCGACTGGACGCTGATGTGCCC 6538 Query 53740 GAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGAC 53799 | |||||| ||||| ||| | ||||| | ||||| ||| | | || | Sbjct 6539 GGCCGAGTGTCCCGGGCTCGTCGACTGCTACGCGGGCGAGTTCGACGCGCTCTACGAGCA 6598 Query 53800 GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 ||||| | ||||||| | | | | |||||||| | | | ||| || | Sbjct 6599 GTACGAGGGGACGGGCCGCGGCCGGCGCACGCTCAAGGCGAGGGCACTGTGGTCGGCCGT 6658 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 || ||| ||| |||||||||| ||| | || |||||||| | ||||| Sbjct 6659 GGTCGAGATGCAGATGGAGACGGGCGGGCCAAGCGTGCTGTACAAGGACGCCTGCAACGT 6718 Query 53920 GAAGAGCAACCAGAAGAACATCGG 53943 ||||||||||||||| || |||| Sbjct 6719 CAAGAGCAACCAGAAGCACCTCGG 6742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211252901200