Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq664 172 6e-38 seq16 161 1e-34 seq663 125 8e-24 seq235 116 4e-21 seq672 84.2 2e-11 >seq664 Length=348155 Score = 172 bits (190), Expect = 6e-38 Identities = 576/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||||| |||||||| || || ||| ||| ||| |||||||| || Sbjct 292363 CCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGACTGCCCTGGAAGGTCTCGTAGGG 292422 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || | |||||| || ||| ||| | | | || || || || ||| ||| || Sbjct 292423 ACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATGGATGCATGGTAGATGGTCTCGAA 292482 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 | |||| | | || | ||| ||| ||||| | || || | || || Sbjct 292483 AATCTGGATGTTGAG-CTGCTTGGCCTCGGGGGAATCGAAAGGCATGCGAAGAGCCAGGA 292541 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | || || || || | || || | ||||| |||||||| ||| |||| | || | Sbjct 292542 AGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGGTGACGCATGTT-GCTCTTT 292600 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | |||||| || | ||||| ||| | ||||||| ||||| ||| | Sbjct 292601 CTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAGC 292660 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCC--CTTC-ACAAAT 80892 ||| | ||||| || ||||| |||| |||||| | |||| | | || || || Sbjct 292661 ACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCGTTCTCAACGTCGACGAAG 292720 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | ||| || ||| || |||| ||||| || || ||||| || | | || ||||| Sbjct 292721 GTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGTGTACTCG 292780 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| || ||| | || || || ||||| ||||| || ||||| |||| Sbjct 292781 ACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTG 292840 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| |||||||| |||| | ||| |||||||||||||||| | || ||| Sbjct 292841 CGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGA 292900 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||||| || | || ||| || ||| || || | | ||| Sbjct 292901 ATGGCGTACCAAAGCTTCTGAGCGCGGACGGTCTCACGGCCGCGACCCTCCTTCTCGTAC 292960 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | ||||| | ||||||| | | || | || || | || | ||||||||||| Sbjct 292961 TGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTG 293020 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| ||| |||| |||| ||| ||| |||||||| ||||| Sbjct 293021 GGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGA 293077 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGC 81307 |||||||| ||| |||||||||||| ||| || | ||||| | || ||||| || Sbjct 293078 ATCCAGAGAGCGTAGAACAGGTCGCG--AGCCCGGACTTCCTCCTTGCCGTGGTTCTTGC 293135 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366 | | || || || | || ||| || ||||||||||| || || | ||||| | || Sbjct 293136 GAAGATCAAGGAAACTGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCAC 293195 Query 81367 CC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 || |||| ||||||||||| ||||| || ||||| Sbjct 293196 CCGGACGCTTG---TTGCCACCCTGGTCAACGTAGCGCGCAGT 293235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||||||| || ||| |||| || || ||||||||||| |||||| Sbjct 291821 ACAGTGAACTGAATTGGCGCAGCGGCGGCCTGCGTACGGAGGTAGTACATGCCAGTCTTG 291880 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || ||||||||| | |||||| || ||| ||| | | || |||| | | Sbjct 291881 AGACCGAGCTTCCAGCCAGCAAAGTGCATCGACGTGATCTTGCCCATCGTAGGGTCTTTC 291940 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||| |||||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 291941 ATGTGGATGTTGAGCGATTGGGACTGGTCAATGAAGGCACCCCGATCGGCAGCCAT 291996 >seq16 Length=352857 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || | || || |||||| Sbjct 16975 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 17034 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || || || ||||||||||| || || || |||||| Sbjct 17035 GACACGATCGACAACGTGAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 17094 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||||||| || ||||| | |||||||| | ||||| || Sbjct 17095 CAGCGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 17154 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||| | ||||| || ||||||| |||||||| Sbjct 17155 ATTCAGAAGGAGTCGACTTTGCATCTGGTACTGCGTCTGCGCGGTGG 17201 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || |||||||| || || |||||||| || Sbjct 17203 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCC 17262 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 17263 GACACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 17322 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || ||||| | || || || | ||||| || Sbjct 17323 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCTGACTACAAC 17382 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| || || || || | || | ||||| || ||||| || Sbjct 17383 ATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGGCA 17432 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | ||| | ||| | Sbjct 16771 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCG 16830 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| | || || ||||| ||| Sbjct 16831 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 16890 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| |||||||| | ||||| || |||| ||||| || ||||| || Sbjct 16891 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 16950 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 16951 CTCGTCCTCCGCCTCCGTGGTGG 16973 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 16488 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 16547 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| || |||||||| | || || || || ||| Sbjct 16548 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCCGGCAAG 16607 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || |||| || ||||| | ||||| || | || ||||| ||||| |||||| Sbjct 16608 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 16667 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 16668 CTCGTCCTCCGCCTCCGCGGTGG 16690 >seq663 Length=530868 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 492963 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 493022 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| || || |||||||||||||| ||||| || ||||||||||| || Sbjct 493023 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 493082 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 493083 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 493142 Query 27594 GG 27595 || Sbjct 493143 GG 493144 >seq235 Length=704811 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 90087 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 90028 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| ||||| ||||| || || || Sbjct 90027 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 89968 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 89967 CGCCTGCGTGGTGG 89954 >seq672 Length=551073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 31332 GTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACA 31391 |||||| || || ||||| ||||| ||| || ||||||||||||||||| || | || Sbjct 499636 GTTCGGAGTCTTCCCGCTTCGAGGAAAGATGCTCAACGTTCGTGACGCCTCGATTGACCA 499577 Query 31392 GGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAA 31451 | || | | || | || | || | || ||| || |||| ||||||||| || Sbjct 499576 GATTTCCAAGAACCAGGAAATCCAGAATATCAAGAAGTTCATCGGTCTTCAGCATAAGAA 499517 Query 31452 GGTATATAATTCACTGAGAGAAT-TGCGGTACGGTCGCCTCATGATTATGACCGACGCAG 31510 || || | ||| ||| | | || ||||| | | ||||||| |||||||| | Sbjct 499516 GGAGTACACGGATGTGA-AGAGTCTCCGCTACGGACACATCATGATCATGACCGATCAGG 499458 Query 31511 ATCTCGACGGCAGTCACATCAAGGGTCT 31538 ||| || || ||||||||||||||||| Sbjct 499457 ATCATGATGGAAGTCACATCAAGGGTCT 499430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305452557280