Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16 127 2e-24 >seq16 Length=352857 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || || | ||||| || | || Sbjct 16975 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 17034 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || |||||||| || ||||| || || || || Sbjct 17035 GACACGATCGACAACGTGAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 17094 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||| ||| | ||| | || || |||||| Sbjct 17095 CAGCGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 17154 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || ||| |||| ||||| |||| |||||||| Sbjct 17155 ATTCAGAAGGAGTCGACTTTGCATCTGGTACTGCGTCTGCGCGGTGGCAT 17204 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| || ||| |||| || || || || ||| | || Sbjct 17202 CATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTC 17261 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | || || || ||||| ||||| || || || || || ||||| Sbjct 17262 CGACACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCA 17321 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || |||| ||| | || | || || ||||| Sbjct 17322 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCTGACTACAA 17381 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||||||| | || ||||| | ||| |||| ||||| Sbjct 17382 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 17429 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || || ||||| || || |||||||| | || || | ||||| Sbjct 16488 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 16547 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || || || |||||||| || || ||||| ||||| || || | ||||||||| Sbjct 16548 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCCGGCAAG 16607 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | ||||| | ||| | ||||| ||||||||||| |||||||| ||| | ||| Sbjct 16608 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 16667 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || | || ||||| || Sbjct 16668 CTCGTCCTCCGCCTCCGCGGTGGTAT 16693 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | || || ||||| || || | || ||| | || || | ||||| Sbjct 16769 TGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGT 16828 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || ||||| || || || || ||||| || || | ||| |||| Sbjct 16829 CGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCA 16888 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 | || | || || | ||| | ||||| |||||||| || ||||||||||| Sbjct 16889 AGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCGAC 16943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914627082880