Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 154 3e-32 seq663 152 1e-31 seq664 120 7e-22 seq235 107 4e-18 >seq16 Length=352857 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || || ||||| || || | ||||| | |||||| Sbjct 16675 AGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCT 16616 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || || || ||||||| |||||||| ||| Sbjct 16615 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCC 16556 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 16555 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 16496 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 16495 TTGCCGGTGA 16486 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| ||||||||||| || || | || || | || || Sbjct 17414 AGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGCCCGTCC 17355 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || || || | || ||||||||| Sbjct 17354 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 17295 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| ||||| || |||||||||||| ||||| ||| Sbjct 17294 TGAATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGATAGTC 17235 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 17234 TTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 17203 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||||| | ||||| Sbjct 16958 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCC 16899 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 16898 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 16839 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || ||||| || ||||| ||| Sbjct 16838 TGGATCTTCGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 16779 Query 211083 TTTCCCGT 211090 || || || Sbjct 16778 TTGCCAGT 16771 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || | ||| ||||| || || ||||| || |||| ||||| | || || Sbjct 17186 AGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCC 17127 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 17126 TCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 17067 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || || || || | ||||| ||| Sbjct 17066 TGGATCTTGGACTTCACGTTGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTC 17007 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 17006 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 16975 >seq663 Length=530868 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 493142 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 493083 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 493082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 493023 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 493022 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 492964 >seq664 Length=348155 Score = 120 bits (132), Expect = 7e-22 Identities = 197/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||||||||||||||| | |||| || ||| |||||| |||||||| Sbjct 292817 CCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAG-TG--ATCCTTGTACAGCATGAAGGGG 292873 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | || ||| |||||||| | |||||||| ||| || ||||| ||| Sbjct 292874 TTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCGCGGACGGTC 292933 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | || || |||||||||| | ||| || ||||||| || |||||| Sbjct 292934 TCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAA 292993 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| | || || || ||| |||||||| | ||| |||| |||| | || Sbjct 292994 ACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCG 293053 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || |||||||||||||| |||| |||||| || ||||| Sbjct 293054 ACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 293094 >seq235 Length=704811 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| || |||| |||||| | ||||| Sbjct 89969 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 90028 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 90029 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 90087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141692965310