Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq663 143 6e-29 seq16 136 1e-26 seq235 84.2 5e-11 >seq663 Length=530868 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || ||| ||||||||| Sbjct 492964 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 493023 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 493024 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 493083 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 493084 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 493142 >seq16 Length=352857 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| |||||||| ||| || ||| Sbjct 17206 CAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCCGAC 17265 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || ||||| ||||| ||||| Sbjct 17266 ACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 17325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| || Sbjct 17326 CGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCTGACTACAACATC 17385 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 17386 CAAAAGGAGTCGACCCTGCA-CTTG 17409 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || || ||||||||||| |||||||| Sbjct 16486 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGA 16545 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || ||||| || |||||||| ||||| || | ||||||||||| | Sbjct 16546 GCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCCGGCA 16605 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| |||||||| | || || |||| || ||| | || || || || || || | Sbjct 16606 AGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTC 16665 Query 178123 ATCTTGT 178129 |||| || Sbjct 16666 ATCTCGT 16672 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||| || ||| ||||||||||| || ||||| Sbjct 16771 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCG 16830 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || | |||||||| || || Sbjct 16831 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 16890 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||| || ||| |||| || || || || || || Sbjct 16891 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 16950 Query 178125 CTTGT 178129 || || Sbjct 16951 CTCGT 16955 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||| | || || || || ||| Sbjct 16978 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCGGAC 17037 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 17038 ACGATCGACAACGTGAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAG 17097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| | Sbjct 17098 CGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAACATT 17157 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||| || Sbjct 17158 CAGAAGGAGTCGACTTTGCATCTGGT 17183 >seq235 Length=704811 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| ||||||||||| || || |||||||| || || |||||||| Sbjct 90087 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 90028 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || ||| | || || ||| |||| || || || || || || || || Sbjct 90027 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGT 89972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720496572636