Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq16 145 7e-30 seq663 136 4e-27 seq235 120 3e-22 >seq16 Length=352857 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||||||| || ||||||||||||||| ||||| || Sbjct 17202 GCCACCGCGCAGACGCAGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCCGA 17143 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || |||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct 17142 GAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 17083 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || |||| ||| | | | ||||| ||||| | Sbjct 17082 GATGCCCTCCTTGTCTTGGATCTTGGACTTC-ACGTTGTCGATCGTGTCCGATGACTCGA 17024 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || || ||||| ||||| || ||||| Sbjct 17023 CTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 16975 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || ||| ||||||||||||||| |||||||| Sbjct 16690 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 16631 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| |||| |||||| || |||| ||| Sbjct 16630 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGA 16571 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 16570 ATGCCTTCCTTATCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCGGACGACTCGAC 16512 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || || || || Sbjct 16511 CTCAAGGGTGATGGTCTTGCCGGT 16488 Score = 109 bits (120), Expect = 5e-19 Identities = 151/208 (73%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| ||||| || | || || ||||||||||| ||||| Sbjct 16938 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAA 16879 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788 |||| |||||| ||||||| ||| | || |||||||||| ||| || ||| || Sbjct 16878 GATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 16819 Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | || | ||||| ||||| ||||| | || || || || || |||| || | Sbjct 16818 GTCG--ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGTGATG 16761 Query 41849 ACGAAAATCTGCATGTTATCGATGGATC 41876 ||| || ||||||| ||||||||| Sbjct 16760 ACG----TCAGCATGTT-GCGATGGATC 16738 >seq663 Length=530868 Score = 136 bits (150), Expect = 4e-27 Identities = 141/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| |||||||| | || |||||||||||||||||||| | Sbjct 493144 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 493085 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| ||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 493084 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 493025 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || ||||| || ||||| || Sbjct 493024 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 492967 Query 41851 GAA 41853 ||| Sbjct 492966 GAA 492964 >seq235 Length=704811 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | ||| || || || ||| ||||||||| ||||| ||||| | Sbjct 89952 CGCCACCACGCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 90011 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | |||||||| | || |||||||||||||| ||||| ||||| ||||| ||||||| || Sbjct 90012 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGG 90071 Query 41754 GAACGCTCTCCTTGTCCAT 41772 | | || ||||||||| || Sbjct 90072 GGATGCCCTCCTTGTCTAT 90090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299989512800