Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq80 120 3e-22 seq114 107 2e-18 seq115 93.3 4e-14 seq111 87.8 2e-12 >seq80 Length=2705162 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| ||||| |||||||| || | |||||| ||||| Sbjct 1573443 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTC 1573384 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| ||||||||||||||||||| || || || ||||||||||| Sbjct 1573383 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 1573324 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | || ||||||| || | || || Sbjct 1573323 AATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGATAGTCTT 1573264 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 1573263 TCCAGTCAGGGTCTTGACGAAGATCTGCATG 1573233 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || || || |||||| ||||| Sbjct 1572981 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTG 1572922 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||| | |||||||| || || || |||||||||||||| || || Sbjct 1572921 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1572862 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||| | ||| | || ||||| || Sbjct 1572861 CGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 1572802 Query 118715 CA 118716 || Sbjct 1572801 CA 1572800 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | || || ||||| ||||| || || Sbjct 1573202 GTCGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCC 1573143 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || ||||||||||||||| || || || Sbjct 1573142 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTC 1573083 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||||| |||||| || | ||| | || |||||||| || || Sbjct 1573082 ACGTTGTCGATCGTGTCCGATGACTCGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 1573023 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 1573022 TTGACGAAGATTTGCAT 1573006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||||| ||| || ||||| || || Sbjct 1572691 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 1572632 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| ||||| ||||| || || || || Sbjct 1572631 GCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTG 1572572 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| |||||| | ||||||||| | ||| | || |||||||| Sbjct 1572571 ACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1572519 >seq114 Length=4268993 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| |||||||||||| || || ||| |||| Sbjct 2016661 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 2016602 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 2016601 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 2016542 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||||| | ||||||||||| ||| | || ||||| || || || || || || Sbjct 2016541 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 2016483 >seq115 Length=1808013 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | || ||||| || || |||||||| || | ||||| ||| Sbjct 898968 CAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 899027 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 899028 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 899087 Query 118646 T 118646 | Sbjct 899088 T 899088 >seq111 Length=3622730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 133209 TTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGA-TATAC 133267 |||| ||| | ||||||| || ||||||||||| || || || || | |||| || | Sbjct 920452 TTGAGGAGCCAGGGGTTGACGACCTGAAACTCGCCAGCCAGCACACGGC-GAGAGTAGAT 920394 Query 133268 ATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGT 133327 ||||||||| |||| |||||| | |||||| |||||| ||||| |||| || || Sbjct 920393 GTTCGACGTGTACGGCTCGAAACACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGT 920334 Query 133328 GGGCATGTACGCCACCAACAAAGAGTT 133354 ||||||| || || | || |||||| Sbjct 920333 GGGCATGGGTGCGACGAGCAGAGAGTT 920307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829791959580