Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq80 136 5e-27 seq114 89.7 6e-13 >seq80 Length=2705162 Score = 136 bits (150), Expect = 5e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || ||||||||| || ||||| |||| || || ||| | Sbjct 1573449 ACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGCCC 1573390 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||||||||| ||||| |||||||| || | ||| | | |||||| Sbjct 1573389 GTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTT 1573330 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | | ||| | | | ||||||| ||||| || |||| ||||| Sbjct 1573329 GTCC-TGAATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGA 1573271 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || ||||| || ||||| ||||| Sbjct 1573270 TAGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 1573234 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||| |||||| || |||||| ||||| ||||| || | || || || | Sbjct 1573221 ACGCAGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCC 1573162 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||| ||||| || || ||||||||||| | || | || |||||| Sbjct 1573161 GTCCTCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 1573102 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || | ||| | | | |||||| || || || || | |||| Sbjct 1573101 GTCTTGGATCTTGGACTTCA-CGTTGTCGATCGTGTCCGATGACTCGACTTCCAGGGTGA 1573043 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || ||||||||||| Sbjct 1573042 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 1573006 >seq114 Length=4268993 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||| || || | || || |||||||| || ||||| | Sbjct 2016663 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 2016604 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 2016603 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 2016544 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 2016543 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 2016484 Query 43174 AG 43175 || Sbjct 2016483 AG 2016482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816778012200