Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq114 107 4e-18 seq87 100 6e-16 >seq114 Length=4268993 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 1514433 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTTAAC 1514492 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||| | || || ||||| |||| ||||| || | Sbjct 1514493 CAGACCCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 1514552 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| | ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 1514553 GGCAAGACCACCTTGATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 1514611 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || || || ||||||||| |||||||| Sbjct 1514612 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTCC 1514654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 |||||||||| || || ||||| ||||| |||||| ||||| | ||| | | || Sbjct 1515835 CTCACTCTCGTATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTT 1515894 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | || ||| ||||||| || ||||||||||||||||| || ||||| Sbjct 1515895 GCTC-GTGGCAGCGTCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 1515953 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || || |||||| Sbjct 1515954 GACTCTCTCGGTGCTCTG 1515971 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 1514793 TCGCTTTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 1514851 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || ||||| || ||||| ||||||||||||||| || ||||| || ||||| Sbjct 1514852 CGATATTCTCCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 1514911 Query 279821 AGTGTCCTACCT 279832 | | |||||| Sbjct 1514912 CGAGAACTACCT 1514923 >seq87 Length=1513422 Score = 100 bits (110), Expect = 6e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| |||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 1001482 TCATTGGTGCCAATGGTGCTGGCAAGTCCACGCTCATCAAGGTCCTGACTGGCGA-AGTC 1001424 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || | | || | | | |||||| || ||| |||| || | |||| || ||| Sbjct 1001423 ATTCCGCAAACCGGCAAGGTCGAGAAGCACCCTAACCTGCGTATTGGTTACATCAAGCAG 1001364 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 || ||| | | ||| |||||| ||| |||| | ||| || ||||| ||| | |||||| Sbjct 1001363 CATGCTCTTGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTACTTGCAGTGG 1001304 Query 280353 CGCTATGCAAGTGG 280366 || || || | ||| Sbjct 1001303 CGTTACGCCAATGG 1001290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835285546715