Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq80 141 2e-28 seq114 86.0 1e-11 >seq80 Length=2705162 Score = 141 bits (156), Expect = 2e-28 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | ||||||||| ||||| || | || || || |||||| Sbjct 1573424 TCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTCCAGCTGCTTACCAGCGAAG 1573365 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || |||||||| ||| ||||| || || || ||||| || || ||| |||||||| Sbjct 1573364 ATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTT 1573306 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||||||||| ||||| || ||||| |||||||| Sbjct 1573305 GTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGATAGTCTTTCCAGTCAGGGTCTTGAC 1573246 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 1573245 GAAGATCTGCAT 1573234 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | ||||| ||||| | || || || || || || |||| Sbjct 1573236 CATG-CCACCGCGCAGACGCAGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGT 1573178 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || ||||| || | || || || ||||||||||||||||| || Sbjct 1573177 CCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCG 1573118 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||| || | |||||||| || || | || || | Sbjct 1573117 GGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGATGACT 1573058 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 1573057 CGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 1573006 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||||||||| ||| || || || || || ||||||| Sbjct 1572721 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1572662 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || |||||||||| ||||| ||| || Sbjct 1572661 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGA 1572602 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||||||||| || ||| || ||||| || || | ||| ||| || || Sbjct 1572601 ATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGACGACTCGAC 1572543 Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449 || || ||||| ||||| ||||| Sbjct 1572542 CTCAAGGGTGATGGTCTTGCCGGT 1572519 >seq114 Length=4268993 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||||||| Sbjct 2016661 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 2016602 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || ||||| || || ||| || || || || |||||||| || ||| || || || Sbjct 2016601 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATT 2016546 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 2016545 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 2016486 Query 288462 GAA 288464 ||| Sbjct 2016485 GAA 2016483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652661852970