Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq111 116 4e-21 seq80 113 4e-20 seq114 98.7 9e-16 >seq111 Length=3622730 Score = 116 bits (128), Expect = 4e-21 Identities = 296/445 (67%), Gaps = 13/445 (3%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| |||| || |||||| ||||||||| |||||||| ||| ||| || | || Sbjct 146879 CGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATC 146820 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | |||||||| ||||| || ||||||||| ||||| Sbjct 146819 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCC 146760 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACAC-TAGAGTCGATC 47316 | || || ||| |||||||| |||||||||| || || | ||| | |||||| Sbjct 146759 CGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAG 146700 Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 || || | | | || ||| | ||| || |||| || |||| || Sbjct 146699 CCCAGCCC--CGAGGCTGTTGAGAGGATCATCAT---CGAGGCTGTCGATATCGAGAAGG 146645 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| | | || || ||||||| || | | || ||||| || | | ||| | Sbjct 146644 AGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTGCC 146585 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 |||||||||| || ||||| ||||||||||| || ||| | ||||| ||| Sbjct 146584 AGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAA---CAAGAAGTACT 146528 Query 47497 ACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 ||| || | | || ||||| || ||| | |||||||||||| ||||||||||||| Sbjct 146527 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAACT 146468 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||| || || || || Sbjct 146467 TCTTCGAGAAGCGTGTTGGTGACTA 146443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || | | |||||| ||| | ||||||| |||||||||||||| || || || || Sbjct 920465 GTCGACCAAGTCCTTGAGGAGCCAGGGGTTGACGACCTGAAACTCGCCAGCCAGCACACG 920406 Query 146097 CCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCG 146155 | ||| || | ||| ||| |||||||||| |||||||| ||||| ||||| Sbjct 920405 GC-GAGAGTAGATGTTCGACGTGTACGGCTCGAAACACTCGTTGAAGCCGAGGATCTGAC 920347 Query 146156 CCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||| ||||| |||||| || || |||| |||||| Sbjct 920346 TGGTCGAGGCGGTGGGCATGGGTGCGACGAGCAGAGAGTT 920307 >seq80 Length=2705162 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || ||||| ||||| ||| | Sbjct 1572721 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1572662 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| ||||||| ||||||||||| ||||| Sbjct 1572661 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGA 1572602 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| || ||||| |||| |||| |||||| | |||||| Sbjct 1572601 ATGCCTTCCTTATCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCGGACGACTCGAC 1572543 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 1572542 CTCAAGGGTGATGGTCTTGCCGGT 1572519 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || ||||| || ||| Sbjct 1572974 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCA 1572915 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 1572914 GCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 1572855 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| |||||||| |||||| || | ||| | || ||||| |||| Sbjct 1572854 ACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 1572800 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| ||| | || ||||| || ||||| ||||| || Sbjct 1573232 CCACCGCGCAGACGCAGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1573173 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1573172 AGGGTACGGCCGTCCTCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGGG 1573113 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||| | |||| |||| ||||||| |||||| Sbjct 1573112 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACGTTG-TCGATCGTGTCCGATGACTCGAC 1573054 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || |||||||| || || || || || || ||||| Sbjct 1573053 TTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 1573006 Score = 104 bits (114), Expect = 2e-17 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | || | |||||| || | || ||||| ||||| || ||||| Sbjct 1573466 TACTGC-CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTA 1573408 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | |||||| || || ||||| || |||||| |||| | ||||||||||| Sbjct 1573407 GTCAGAGAGCGTGCGCCCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATC 1573348 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| || || ||| | |||| |||| ||||| | | Sbjct 1573347 CGGCGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATCGTGTCGGAAG 1573289 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || |||| || | || || || ||||| || || || || ||||||||| Sbjct 1573288 ATTCAACCTCGAGCGTGATAGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATG 1573233 >seq114 Length=4268993 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 2016661 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 2016602 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 2016601 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 2016542 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||||| |||||| |||| ||| | || ||||| || || || || || || Sbjct 2016541 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 2016483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500116467600