Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq111 100 3e-16 seq76 87.8 2e-12 >seq111 Length=3622730 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||| |||||||||||||| || || |||||| ||||| Sbjct 146731 GCAAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 146790 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||| Sbjct 146791 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATA 146850 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGC 127669 ||||| || ||||| |||| |||||| Sbjct 146851 CCCTCGACGGCGGCGAAGGCAATCAGACGC 146880 >seq76 Length=4877926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAA 12930 ||| |||| |||||| ||||| || ||||||| ||| || || || | ||| || ||| Sbjct 576350 CTTTCCGATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTC-CGCGCAG 576292 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | || | ||| || |||||| | ||| ||||| |||||||||||||| || | || Sbjct 576291 TGGCGAACAGATCGCGTACTCTCGAAGGACCAACACCGACAAACATCTCCACGAACTCGG 576232 Query 12991 --CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 | || | ||| | || ||| || ||| |||||||| || |||| || ||||| Sbjct 576231 AACCGCTG-ACACT-GAAGAATGGCACGCCAGATTCACCGGCAGTGGCCTTTGCAAGGAG 576174 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 ||||| || || || || || | |||| || ||||| ||||| | |||||| Sbjct 576173 CGTCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTCGCACCA 576116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506318083400