Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq111 105 8e-18 seq76 105 8e-18 >seq111 Length=3622730 Score = 105 bits (116), Expect = 8e-18 Identities = 294/448 (66%), Gaps = 5/448 (1%) Strand=Plus/Minus Query 110373 ACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGT 110432 ||| | |||||| || || ||| |||||| |||||| || |||||| | ||| | Sbjct 919784 ACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTT 919725 Query 110433 ACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG 110491 ||| || || ||| | || ||||||||| | ||| | | || | | || |||| || Sbjct 919724 ACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAG-CGCGGACGGTCT 919666 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 | || |||| |||| |||||||| ||| | |||| || || | ||| || | Sbjct 919665 CACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAA 919606 Query 110552 CATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 |||| | || ||| || || ||| || | ||||| ||| | || || ||| | Sbjct 919605 CATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCGA 919546 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | | |||||||| || ||||||||||| | || |||| ||||| || || | | Sbjct 919545 CACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGGACTT 919486 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 | || | || ||||| ||| || || | || | || || | ||||||||| | Sbjct 919485 CCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAAACTGAAGACGTCGGCGTGCCATGGCT 919426 Query 110732 CGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTG 110788 |||| |||| |||| || ||| ||| || |||||| ||| ||||| || | Sbjct 919425 CGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTAGCGCGCAG 919366 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAAT 110816 || ||| |||| | ||||| ||||| Sbjct 919365 TGTTGTTGTAGACGCGAAGCATGGGAAT 919338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 335/514 (65%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| |||||||| || ||||| || ||| || ||||| ||||| Sbjct 146443 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCTGAGCGAAATGTTCTCCATG 146502 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || ||| ||| || | | | |||| | | | ||| || || Sbjct 146503 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTGCCGAGCGCCAC-CAGCAGGCG 146561 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 || | ||| ||||||| || | | |||| | |||||| || | ||| | Sbjct 146562 GTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGAGCG-A 146620 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || ||||| | ||| | ||||||||| || ||||| || | | ||| | Sbjct 146621 CGGGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATCCTCT 146680 Query 119446 GAATAGTTTCTGTCGATGG--TTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTC 119503 || || || | | ||| || | | | | | | |||| | |||||| || Sbjct 146681 CAACAGCCTCGGG-GCTGGGCTTCGACT-TGATGTGCGAGAACAGCAGGCAGGCAAAGTC 146738 Query 119504 TTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG 119563 || | || ||||| || ||||||||||| || |||| || || |||||||| Sbjct 146739 GGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAG 146798 Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 || | ||||| ||||| ||||||| || || |||||||| ||||| || Sbjct 146799 ACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTCGAC 146858 Query 119624 ACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGA 119679 |||||| || | |||||| || ||||||||| |||||| || ||| | Sbjct 146859 GGCGGCGAAGGCAATCAGACGCGATGC-GAAGGTCGAGTTCTTGTCGCAGATCCAGCGCA 146917 Query 119680 GAGCCCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 ||||||||| |||||| | || |||||||| || Sbjct 146918 GAGCCCAGTCGGCCTTCCTCTTGATGCAGGGAAC 146951 >seq76 Length=4877926 Score = 105 bits (116), Expect = 8e-18 Identities = 277/416 (67%), Gaps = 25/416 (6%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 || |||||||| || || | ||||| | || |||| ||| | ||| ||| | ||| Sbjct 576520 TCAAAACGACCAGGACGCATAAGAGCCTTGTCGAGAACATCAGGTCTGTTAGTACCAGCA 576461 Query 11566 ATGACTACAA--TGCCAGTCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | ||| || | ||| ||| || ||||| || || |||| |||||| Sbjct 576460 AGGACGACCACTTGC---TCCGAGGTGTTGAACCCATCCATCTCGGTCAGAATCTGGTTC 576404 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC-------TGCCGAACGCTT--C 11673 | ||| ||| | ||| |||||| |||||| ||| | ||| | Sbjct 576403 AGCGTGCTTTCTCTCTCGTCGTTGCC------ACCACCAAAGCTTTGCTTGGCTCTTGAC 576350 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || |||| ||||| || ||||||||||| | ||| || || | | || || Sbjct 576349 TTTCCGATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTCCGCGCAGTG 576290 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || ||||| | | | |||||||| || |||||||| ||||| | | Sbjct 576289 GCGAACAGATCGCGTACTCTCGAAGGACCAACACCGACAAACATCTCCACGAACTCGGAA 576230 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || | |||||||| ||| || || ||| ||||| || |||| || ||||| | Sbjct 576229 CCGCTG-ACACTGAA-GAATGGCACGCCAGATTCACCGGCAGTGGCCTTTGCAAGGAGCG 576172 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 ||||||| ||||| || | ||||| |||| |||||||| ||||| || |||||| Sbjct 576171 TCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTCGCACCA 576116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975153347000