Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq111 181 2e-40 >seq111 Length=3622730 Score = 181 bits (200), Expect = 2e-40 Identities = 672/1031 (65%), Gaps = 39/1031 (4%) Strand=Plus/Minus Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 || |||||||||||||| || ||| ||||||| |||||||||||| ||| ||| Sbjct 920137 GCATGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAATCGAAA 920078 Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 ||||| || || | | ||| | ||||| || || | || || | ||||||| | | Sbjct 920077 GGCATGCGAAGAGCCAGGAAGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGG 920018 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | | ||||| || || ||||| || || ||||| |||||| | ||| Sbjct 920017 TGACGCATGTTGCTCTTTCTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTG 919958 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || | |||| || || | |||||| ||||||| |||| | | Sbjct 919957 TTCAAGTTCTTCACGAGCACCTGGGTAACCTCGTGAAGCTTCT------TGAAGTCGTA- 919905 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 | | |||| | | | || || || | || || | ||||| ||| || Sbjct 919904 --GACACCGTTCTCAACG---TCGACGAAGGTCGGGAGAGCCAGCGAGGCCAAGTTGCAG 919850 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| || | || |||| | |||||| || |||||| || | Sbjct 919849 ACAGCGACCTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTGGAGCTGCGG 919790 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGAGCATAAA 221844 || || || |||| || || || |||||| ||| ||| | |||||||| ||||| || Sbjct 919789 ATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTG-CAGTGATCCTTGTACAGCATGAA 919731 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || ||||| | ||| ||| | ||||| || ||| || | |||| |||| | Sbjct 919730 GGGGTTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGCT-TCTGAGCGCGGA 919672 Query 221904 CCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAGAGCATGTCAAACT 221960 | ||| || | | || |||||| ||| || ||| | ||| ||||| | | |||| Sbjct 919671 CGGTC-TCACGGCCGCGACCCTC---CTTCTCGTACTGCTCGTAAAGAGCCT--CGAACT 919618 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAG-TGC 222019 || || || | || |||| || || ||| | ||| ||||| || ||||| ||| Sbjct 919617 CGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGC 919558 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 ||| | | ||| | | ||||||||| || || ||||| || || | || || || Sbjct 919557 C-GTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCG 919499 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA-AAACTCAAAAATGTC 222138 | | ||| |||||| ||||| ||| || | ||||| | ||||| || | ||| Sbjct 919498 CGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAAACTGAAGAC-GTC 919440 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATC 222198 |||||||| ||||| || |||| ||| | || || || ||||||||||||||||| || Sbjct 919439 GGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTC 919380 Query 222199 CACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 || | | ||| | |||| ||| |||||| | || | || |||||| | Sbjct 919379 AACGTAGCGC-GCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGC 919321 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT----GCCG 222313 |||||||||| |||||| ||| ||| | || | | || |||| ||| Sbjct 919320 CGTTGGTGCCAGCAATGTAGCTACCAGTGGCAC---GGATGC-GGTGAACATTGAGACCG 919265 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 || || || ||| || ||||||||||||||| ||||||| ||||| ||| || || Sbjct 919264 ATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCG 919205 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || |||||||| | || | || || ||||||| || ||||| |||| || | Sbjct 919204 ATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGACGCCAACTGAGGCTTGGGGGTTCCA 919145 Query 222434 GCGTTAAACAG 222444 ||||| ||||| Sbjct 919144 GCGTTGAACAG 919134 Score = 168 bits (186), Expect = 1e-36 Identities = 344/515 (67%), Gaps = 9/515 (2%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| |||||||||||||||| ||||| || |||||| | | ||| | | || Sbjct 146948 CCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACC 146889 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | ||| ||| | ||||| || || || ||||| ||||| |||||||| || || Sbjct 146888 TTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC 146829 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || ||||||||| || ||| ||||||||| Sbjct 146828 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAG 146769 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | | || ||||| | |||| || |||||||||||||| | | || ||| Sbjct 146768 CTCATCTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCG---CAC 146712 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | || || | ||| | || | || ||||||| |||||||| || ||| Sbjct 146711 ATCAAGTCGAAGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATC 146652 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||||||||||| | | |||||||| || ||| Sbjct 146651 GAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTC 146592 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 ||| |||| ||||| |||| || || |||| ||||| ||| | ||| || | | Sbjct 146591 ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGC-GCTCGGCAACAAGAA 146533 Query 26229 ACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 ||||| |||| | ||||| |||||||| ||||| ||||| ||| | || ||| Sbjct 146532 GTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAG 146475 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||| || ||| | || || ||||| || Sbjct 146474 ACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 146440 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || |||||||| || Sbjct 147337 ATCTGGCAGATGTACAAGAAGGCGGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 147278 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | ||| ||||| ||| || ||| | Sbjct 147277 TCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCC 147218 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || ||||| || ||||||||||| || |||| | Sbjct 147217 CACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGAGCGC 147158 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || |||||||| |||||||| Sbjct 147157 TTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 147105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843464785600