Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq111 174 2e-37 seq114 89.7 7e-12 seq76 87.8 3e-11 >seq111 Length=3622730 Score = 174 bits (192), Expect = 2e-37 Identities = 194/254 (76%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581 ||||||| ||||||| ||||| |||||||| ||||| | | || ||||||| || || Sbjct 146676 GATCATCATCGAGGCTGTCGATATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGC 146617 Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 || |||||||||| ||||| |||||||||||||||||| || || ||||| |||||| Sbjct 146616 TCTTCTCGGCATGAATGCCAC-GCTCATGTGCCAGTACATCGAGTTC-GTCGCGGACCGC 146559 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 ||||| | |||||||||| | ||||| ||||| | ||||||| ||| | || Sbjct 146558 CTGCTGGTGGCGCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 146500 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760 |||| || |||||| |||||||||||||| |||||| || | ||| || ||| Sbjct 146499 GGAGAACATTTCGCTCAGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 146440 Query 1456761 CAAGGCCGGCGTCA 1456774 ||||||||||||| Sbjct 146439 GAAGGCCGGCGTCA 146426 Score = 159 bits (176), Expect = 5e-33 Identities = 210/288 (73%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||| || || ||||| || |||||| | |||| Sbjct 147338 GATCTGGCAGATGTAC-AAGAAGGCGGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACC 147280 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || | | ||||||||||||| |||||| Sbjct 147279 TCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCT 147220 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| |||||||| || |||||| |||||||||||| ||||||||| | || Sbjct 147219 CCCACGTTCTCGCCTTCTT-CGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGAG 147161 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 147160 CGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 147101 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 147100 ATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 147053 Score = 123 bits (136), Expect = 4e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024 |||| ||||| || | |||||||||| ||| ||||| || ||||| ||||| |||| Sbjct 919168 CGTCTTGCTTCCTCATCGACATGAAGGAGGATAGCATCGACGGTATCTACGACACCCTCA 919227 Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084 || ||||| | ||||||||| | || || ||||||||| | | ||| | | Sbjct 919228 AGACCTGCGCCATGATCTCCAAGACCGCTGGAGGCATCGGTCTCAATGTTCACCGCATCC 919287 Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144 | ||| | || |||| | || |||||||||||| ||||||| | | ||||||| Sbjct 919288 GTGCCACTGGTAGCTACATTGCTGGCACCAACGGCACTAGCAACGGCTTGATTCCCATGC 919347 Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||| | ||| |||| ||||||||||| |||||| Sbjct 919348 TTCGCGTCTACAACAACACTGCGCGCTACGTTGACCAG 919385 Score = 120 bits (132), Expect = 4e-21 Identities = 353/539 (65%), Gaps = 14/539 (3%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||||| || ||| | || ||||| || | |||||||| ||||| Sbjct 920259 TGGGACTGGGACAGCGTGAAGGCTGAGATTGCTCAGCACGGTATCCGCAACTCTCTGCTC 920318 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 || || | ||||||||| ||| |||| |||||||| ||| || |||| |||||| Sbjct 920319 GTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTCAACGAGTGTTTCGAG 920378 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||| ||||||||| | ||||| ||||| | ||||| ||| || |||||| Sbjct 920379 CCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAGTTTCAGGTCGTCAAC 920438 Query 263059 CGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCGG 263118 | | || ||||| | |||| | | |||||||||| | | | |||| Sbjct 920439 CCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCTGATCAGATGAAGAACCGC 920498 Query 263119 CTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCTC 263178 |||| || | | || || | ||| | | || | ||| | || || Sbjct 920499 ATCATCGCTTCCAACGGTTCTATCCAGCAGATCCCCAACAT-----TCCCGAC-GACATC 920552 Query 263179 AAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGCG 263235 ||||| |||| |||||| || |||||| | | | || ||||| | | ||||| Sbjct 920553 AAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGC---ACCATCGTCCAGATGGCT 920609 Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295 ||||| || | ||| | |||||| ||| ||||||||| | || | ||||| Sbjct 920610 GCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCACATGAAAGACCCT 920669 Query 263296 ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 ||| | | ||||||||||||||| || ||| | ||| |||||||||||| Sbjct 920670 ACGATGGGCAAGATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 920729 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGATCAGG 263413 |||||||| || || || | | |||| | | |||| ||||| ||||| ||||| |||| Sbjct 920730 ATGTACTACCTCCGTACGCAGGCCGCCG-CTGCGCCAATTCAGTTCACTGTCGACCAGG 920787 Score = 93.3 bits (102), Expect = 6e-13 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| || |||||| ||||| | |||||| ||| || || Sbjct 146933 AAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTCGCATCGC 146879 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || | | ||| ||||| |||||||| ||||| ||| ||| ||| | |||||| Sbjct 146878 GTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCT 146819 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||||||||||||||| |||||||||||||| Sbjct 146818 TCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 146785 >seq114 Length=4268993 Score = 89.7 bits (98), Expect = 7e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 |||||| || || ||| ||| | || || || ||||||||| |||| ||||||| ||| Sbjct 4171820 GACCTGATCTCGCTGGGTGCCATTGGCGCACGTACCACCGAGTCCCAGTTGCACCGTGAG 4171879 Query 165813 ATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGC 165871 |||| || | ||| | |||||||||||||| ||| |||||||||| ||| | ||| Sbjct 4171880 CTGGCCTCCGGTCTGTCCTACCCCATTGGCTTCAAGAACGGCACCGACGGTAGCCTGGGC 4171939 Query 165872 GACGGCCCTCGATGCC 165887 | | ||| |||| ||| Sbjct 4171940 GTC-GCCGTCGACGCC 4171954 >seq76 Length=4877926 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 1571189 GCAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCT 1571248 ||||||||| || | ||||||||||| ||| |||||||||| ||||||| | |||| Sbjct 3965246 GCAGGTGCCGCTCATCCTGGCGTGGGCGCTGAGCATCCACAAGGCCCAGGGCCAGACGCT 3965187 Query 1571249 GGACCGGGCCGTC-ATCTCGA--TGAGCGGCATCTTTGACTGTGGCCAGGCCTACGTGGC 1571305 ||| || |||| | |||| | || || |||| || |||||||| |||||||| Sbjct 3965186 GGAGCG---CGTCAAGGTCGACCTCGGCCGCGTCTTCGAGAAGGGCCAGGCGTACGTGGC 3965130 Query 1571306 GCTGTCGCGC 1571315 |||||||||| Sbjct 3965129 GCTGTCGCGC 3965120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177800108038630