Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq111 111 2e-19 seq76 102 1e-16 >seq111 Length=3622730 Score = 111 bits (122), Expect = 2e-19 Identities = 471/738 (64%), Gaps = 7/738 (1%) Strand=Plus/Minus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || |||| || || |||| | |||||| |||||||||| | || || ||| Sbjct 919864 GAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAA 919805 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || || || || | ||||||||| || ||| ||| || |||| Sbjct 919804 AGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 919745 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| |||||| | || | || ||||| |||| || |||||| || | ||| | | Sbjct 919744 TTGTACAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGC 919685 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || | ||| | || || | | | || ||||| | |||||||| ||| || || Sbjct 919684 TTCTG-AGCGCGGACGGTCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGC 919626 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || ||||| || || | |||| ||||| || || | ||||| | ||| | Sbjct 919625 CTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGT 919566 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || || ||| || || ||||||||||| || || |||||||| || |||| Sbjct 919565 CCAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 919506 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || || ||| || |||| || | || || || || | || | || | Sbjct 919505 CAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAAACTGAA 919446 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGC 119191 || || |||||||| || || ||||| | |||| | ||| ||| ||| | Sbjct 919445 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACC 919386 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | ||||||| ||| | || |||||||| ||||| | || | | Sbjct 919385 CTGGTCAACGTAGCGCGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCT 919326 Query 119252 TTGGCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 ||| || || || ||| | || | |||| | || ||| | | | || Sbjct 919325 AGTGCCGTTGGTGCCAGCAATGTAGCTAC-CAGTGGCACGGATGCGGTGAACATTGAGAC 919267 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || || || ||| ||||| ||||| | |||| || ||||||| || | Sbjct 919266 CGATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCGT 919207 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 |||| || |||| | ||||||||||||| || || |||||| |||| || | Sbjct 919206 CGATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGACGCCAACTGAGGCTTGGGGGTTC 919147 Query 119431 CAGCGTTGAAGAGAGTTG 119448 |||||||||| |||| || Sbjct 919146 CAGCGTTGAACAGAGCTG 919129 Score = 107 bits (118), Expect = 2e-18 Identities = 298/445 (67%), Gaps = 14/445 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 ||||| ||||| ||||||||||||||||| ||||| ||| | ||| | | |||||||| Sbjct 146443 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG-CTGAGCGAAATGTTCTCCAT 146501 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | ||| | | | || | || | | || || | Sbjct 146502 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTG-CCGAGCGCCACCAGCAGGC 146560 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTA 129904 | |||| |||| |||| ||||||| |||| | || ||||| |||| || | | Sbjct 146561 GGTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGAGCGA 146620 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | || ||||| ||| | |||| ||||||| || || ||||| || | ||| Sbjct 146621 CG-GGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATCCTC 146679 Query 129965 TGAATGGTCTCCGTGCCAGG--TCTA-TTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAA 130020 | || | ||| | || || || | ||| | || | ||| || |||||| Sbjct 146680 TCAACAGCCTCGGGGCTGGGCTTCGACTTG----ATGTGCGAGAACAGCAGGCAGGCAAA 146735 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| | ||||| |||||||||||||| || || |||||| ||||| ||||| Sbjct 146736 GTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 146795 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 |||||| |||||||| | |||||| || | || ||||| ||||||||| ||||| Sbjct 146796 GAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTC 146855 Query 130141 CACACACGCGAACGCAAAGAGACGC 130165 || ||||| |||| |||||| Sbjct 146856 GACGGCGGCGAAGGCAATCAGACGC 146880 >seq76 Length=4877926 Score = 102 bits (112), Expect = 1e-16 Identities = 169/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAA 14291 ||| |||| |||||| |||||||||||||||| ||| || || || | ||| || ||| Sbjct 576350 CTTTCCGATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTC-CGCGCAG 576292 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || | ||| || |||||| | ||| ||||| |||||||||||||| || | || Sbjct 576291 TGGCGAACAGATCGCGTACTCTCGAAGGACCAACACCGACAAACATCTCCACGAACTCGG 576232 Query 14352 --CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | || | ||| | || ||| || ||| ||||||||| || |||| || ||||| Sbjct 576231 AACCGCTG-ACACT-GAAGAATGGCACGCCAGATTCACCGGCAGTGGCCTTTGCAAGGAG 576174 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 ||||| || || || || || | |||| || ||||| ||||| | |||||| Sbjct 576173 CGTCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTCGCACCA 576116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434310999400