Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq80 120 9e-22 seq114 84.2 7e-11 >seq80 Length=2705162 Score = 120 bits (132), Expect = 9e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || |||||||| || ||||| || ||||| || || || Sbjct 1572725 CATACCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 1572666 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || || || ||||| | || |||||||| || Sbjct 1572665 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGG 1572606 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| |||||||| || || ||| || || || || || | || || | | Sbjct 1572605 AGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGACGACT 1572547 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| ||||| Sbjct 1572546 CGACCTCAAGGGTGATGGTCTTGCCGGT 1572519 Score = 109 bits (120), Expect = 2e-18 Identities = 261/395 (66%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || ||||| || || ||||| | || |||| ||| | |||||| | || | Sbjct 1554472 CCTGAGGAAATCTCTTCCATGGTCCTGACCAAGATGAGGGAGACTGCTGAGTCGTACCTC 1554531 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | |||||| |||| || || ||||| || || || ||||||| Sbjct 1554532 GGTGGCACCGTCAACAACGCTGTTGTTACCGTCCCCGCCTACTTCAACGACTCCCAGCGC 1554591 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||| || || | || || || | || || || || Sbjct 1554592 CAGGCTACCAAGGATGCCGGTCTCATCGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 1554651 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || || || || | | | || || | Sbjct 1554652 CCTACTGCCGCTGCCATCGCCTACGGTCTCGACAAGAAGGCTACTGGTGAGCGCAACGTC 1554711 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || ||| | || ||||||||||| ||||| || || || || |||| || || Sbjct 1554712 ATGATCTTCGATCTTGGCGGTGGTACTTTCGATGTTTCCCTCCTCACCATTGAGGAAGGT 1554771 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | ||||| |||||||| || || ||||| || || || || || Sbjct 1554772 ATCTTCGAGGTCAAGTCCACTGCCGGTGATACTCACCTGGGTGGCGAGGACTTCGACAAC 1554831 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 |||||||| || || ||||| || || || || Sbjct 1554832 CGTCTCGTCAACCACTTCGTTAACGACTTCAAACG 1554866 Score = 98.7 bits (108), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||| ||||| || || || || | Sbjct 1573012 TTTGCATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 1572953 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| ||||| | || ||||| | Sbjct 1572952 AGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 1572893 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | || || | Sbjct 1572892 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGAGG 1572833 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || ||||| || | ||||| || || | ||| Sbjct 1572832 ACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGT 1572796 >seq114 Length=4268993 Score = 84.2 bits (92), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||| || || |||||||| || Sbjct 3764506 CGCGGGACACCAAGCGTGACGTTC---TTCGAAGACACACCGGCGAAATGGAAAGTGTTC 3764450 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || || | ||||| ||||| |||||||| |||| || |||||||||||| Sbjct 3764449 AGAGTCATCTGCGTTGCAGGCTCCCCAATCGACTGCGCGGCAAGCACACCAACCATTTCT 3764390 Query 377578 CCAGGATTGACAATAGC 377594 || || |||| || || Sbjct 3764389 CCGGGGCTGACGATCGC 3764373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252167367345