Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq111 176 5e-39 seq80 167 3e-36 seq114 125 8e-24 seq115 116 4e-21 seq74 84.2 2e-11 >seq111 Length=3622730 Score = 176 bits (194), Expect = 5e-39 Identities = 577/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| |||||||||||||| || || ||| ||| ||| |||||||| || Sbjct 920237 CCACATGTCGTACTGCAAGATGCCCTGAGAGGCAGGACTGCCCTGGAAGGTCTCGTAGGG 920178 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || | |||||| || ||| ||| | | | || || || || ||| ||| || Sbjct 920177 ACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATGGATGCATGGTAGATGGTCTCGAA 920118 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 | |||| | | || | ||| ||| ||||| | || || | || || Sbjct 920117 AATCTGGATGTTGAG-CTGCTTGGCCTCGGGGGAATCGAAAGGCATGCGAAGAGCCAGGA 920059 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | || || || || | || || | ||||| |||||||| ||| |||| | || | Sbjct 920058 AGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGGTGACGCATGTT-GCTCTTT 920000 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | |||||| || | ||||| ||| | ||||||| ||||| ||| | Sbjct 919999 CTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAGC 919940 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCC--CTTC-ACAAAT 80892 ||| | ||||| || ||||| |||| |||||| | |||| | | || || || Sbjct 919939 ACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCGTTCTCAACGTCGACGAAG 919880 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | ||| || ||| || |||| ||||| || || ||||| || | | || ||||| Sbjct 919879 GTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGTGTACTCG 919820 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| || ||| | || || || ||||| ||||| || ||||| |||| Sbjct 919819 ACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTG 919760 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| |||||||| |||| | ||| |||||||||||||||| | || ||| Sbjct 919759 CGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGA 919700 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||||| || | || ||| || ||| || || | | ||| Sbjct 919699 ATGGCGTACCAAAGCTTCTGAGCGCGGACGGTCTCACGGCCGCGACCCTCCTTCTCGTAC 919640 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | ||||| | ||||||| | | || | || || | || | ||||||||||| Sbjct 919639 TGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTG 919580 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| ||| |||| |||| ||| ||| |||||||| ||||| Sbjct 919579 GGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGA 919523 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGC 81307 |||||||| ||| |||||||||||| ||| || | ||||| | || ||||| || Sbjct 919522 ATCCAGAGAGCGTAGAACAGGTCGCG--AGCCCGGACTTCCTCCTTGCCGTGGTTCTTGC 919465 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366 | | || || || | || ||| || ||||||||||| || || | ||||| | || Sbjct 919464 GAAGATCAAGGAAACTGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCAC 919405 Query 81367 CC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 || |||| ||||||||||| ||||| || ||||| Sbjct 919404 CCGGACGCTTG---TTGCCACCCTGGTCAACGTAGCGCGCAGT 919365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||||||| || ||| |||| || || ||||||||||| |||||| Sbjct 920779 ACAGTGAACTGAATTGGCGCAGCGGCGGCCTGCGTACGGAGGTAGTACATGCCAGTCTTG 920720 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || ||||||||| | |||||| || ||| ||| | | || |||| | | Sbjct 920719 AGACCGAGCTTCCAGCCAGCAAAGTGCATCGACGTGATCTTGCCCATCGTAGGGTCTTTC 920660 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||| |||||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 920659 ATGTGGATGTTGAGCGATTGGGACTGGTCAATGAAGGCACCCCGATCGGCAGCCAT 920604 >seq80 Length=2705162 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || || || |||||| Sbjct 1573006 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTCGAGTCATCG 1573065 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || || || ||||||||||| || || || |||||| Sbjct 1573066 GACACGATCGACAACGTGAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 1573125 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||||||| || ||||| | |||||||| | ||||| || Sbjct 1573126 CAGCGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 1573185 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||| | ||||| || ||||||| |||||||| Sbjct 1573186 ATTCAGAAGGAGTCGACTTTGCATCTGGTACTGCGTCTGCGCGGTGG 1573232 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || |||||||| || || |||||||| || Sbjct 1573234 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCC 1573293 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 1573294 GACACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 1573353 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || ||||| | || || || | ||||| || Sbjct 1573354 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCTGACTACAAC 1573413 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| || || || || | || | ||||| || ||||| || Sbjct 1573414 ATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGGCA 1573463 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | ||| | ||| | Sbjct 1572802 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCG 1572861 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| | || || ||||| ||| Sbjct 1572862 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 1572921 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| |||||||| | ||||| || |||| ||||| || ||||| || Sbjct 1572922 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1572981 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 1572982 CTCGTCCTCCGCCTCCGTGGTGG 1573004 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 1572519 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 1572578 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| || |||||||| | || || || || ||| Sbjct 1572579 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCCGGCAAG 1572638 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || |||| || ||||| | ||||| || | || ||||| ||||| |||||| Sbjct 1572639 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 1572698 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 1572699 CTCGTCCTCCGCCTCCGCGGTGG 1572721 >seq114 Length=4268993 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 2016482 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2016541 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| || || |||||||||||||| ||||| || ||||||||||| || Sbjct 2016542 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 2016601 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 2016602 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 2016661 Query 27594 GG 27595 || Sbjct 2016662 GG 2016663 >seq115 Length=1808013 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 899087 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 899028 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| ||||| ||||| || || || Sbjct 899027 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 898968 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 898967 CGCCTGCGTGGTGG 898954 >seq74 Length=3761735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 31332 GTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACA 31391 |||||| || || ||||| ||||| ||| || ||||||||||||||||| || | || Sbjct 2020036 GTTCGGAGTCTTCCCGCTTCGAGGAAAGATGCTCAACGTTCGTGACGCCTCGATTGACCA 2019977 Query 31392 GGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAA 31451 | || | | || | || | || | || ||| || |||| ||||||||| || Sbjct 2019976 GATTTCCAAGAACCAGGAAATCCAGAATATCAAGAAGTTCATCGGTCTTCAGCATAAGAA 2019917 Query 31452 GGTATATAATTCACTGAGAGAAT-TGCGGTACGGTCGCCTCATGATTATGACCGACGCAG 31510 || || | ||| ||| | | || ||||| | | ||||||| |||||||| | Sbjct 2019916 GGAGTACACGGATGTGA-AGAGTCTCCGCTACGGACACATCATGATCATGACCGATCAGG 2019858 Query 31511 ATCTCGACGGCAGTCACATCAAGGGTCT 31538 ||| || || ||||||||||||||||| Sbjct 2019857 ATCATGATGGAAGTCACATCAAGGGTCT 2019830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309580178800