Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001975905.1_202017-01-31] 115 sequences; 37,268,684 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq114 143 6e-29 seq80 136 1e-26 seq115 84.2 5e-11 >seq114 Length=4268993 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || ||| ||||||||| Sbjct 2016483 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2016542 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 2016543 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 2016602 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 2016603 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 2016661 >seq80 Length=2705162 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| |||||||| ||| || ||| Sbjct 1573237 CAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCCGAC 1573296 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || ||||| ||||| ||||| Sbjct 1573297 ACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 1573356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| || Sbjct 1573357 CGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCTGACTACAACATC 1573416 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 1573417 CAAAAGGAGTCGACCCTGCA-CTTG 1573440 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || || ||||||||||| |||||||| Sbjct 1572517 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGA 1572576 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || ||||| || |||||||| ||||| || | ||||||||||| | Sbjct 1572577 GCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCCGGCA 1572636 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| |||||||| | || || |||| || ||| | || || || || || || | Sbjct 1572637 AGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTC 1572696 Query 178123 ATCTTGT 178129 |||| || Sbjct 1572697 ATCTCGT 1572703 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||| || ||| ||||||||||| || ||||| Sbjct 1572802 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCG 1572861 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || | |||||||| || || Sbjct 1572862 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 1572921 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||| || ||| |||| || || || || || || Sbjct 1572922 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1572981 Query 178125 CTTGT 178129 || || Sbjct 1572982 CTCGT 1572986 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||| || || || || ||| Sbjct 1573009 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTCGAGTCATCGGAC 1573068 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 1573069 ACGATCGACAACGTGAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAG 1573128 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| | Sbjct 1573129 CGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAACATT 1573188 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||| || Sbjct 1573189 CAGAAGGAGTCGACTTTGCATCTGGT 1573214 >seq115 Length=1808013 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| ||||||||||| || || |||||||| || || |||||||| Sbjct 899087 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 899028 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || ||| | || || ||| |||| || || || || || || || || Sbjct 899027 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGT 898972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729426377310