Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236465.1_202017-07-
28] 372 sequences; 30,276,903 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq11 140 2e-28
seq298 129 4e-25
>seq11
Length=818581
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 260800 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 260859
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 260860 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 260894
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 269325 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 269384
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 269385 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 269419
>seq298
Length=233650
Score = 129 bits (142), Expect = 4e-25
Identities = 199/284 (70%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260
|||||||||||||| ||| ||||||| ||||||| ||||| ||||| ||||||||
Sbjct 65167 TTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGGTAGAGGGGAAGGGTAACGGTATC 65108
Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320
|| || ||| | ||||| || | | |||||| | ||||| ||||| | | |||
Sbjct 65107 AAGACTGTCGTCGTCAATCTGGCCAACGTCGCTTACCAGCTCGCCCGCCCGCCAAGCTAT 65048
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
| || || || || | ||| || ||||| ||||| | |||| | ||| ||||
Sbjct 65047 GTCATCAAGTACTTTGGTTTCGAGCTCGGCGCCCAGACCAATATTGACCCCAAGGACGAC 64988
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| | ||||| | ||| | || ||||| |||| |||| || || |||||
Sbjct 64987 CGCTGGATCATCAACGGTGCACATGAGGCTACCAAGTTGCAAGACTACCTCGATGGCTTC 64928
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| |||||| || || || ||| ||| | ||||| |||||
Sbjct 64927 ATCAACAAGTTCGTCCTCTGCAAGGACTGCAAGAACCCCGAGAC 64884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945681433132
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |