Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236465.1_202017-07-
28] 372 sequences; 30,276,903 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq335 138 1e-26
seq305 134 2e-25
seq328 116 5e-20
seq350 98.7 1e-14
seq121 93.3 5e-13
seq361 91.5 2e-12
>seq335
Length=67459
Score = 138 bits (152), Expect = 1e-26
Identities = 304/456 (67%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842
|| |||||||||| ||||| | | ||||||||||| ||||||||| | || |||
Sbjct 5364 GGGTCGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAACCATCG 5423
Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902
|||| | | || || ||| ||||||| || | | | |||| ||
Sbjct 5424 AACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGGGCATGC 5483
Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962
|||| | ||||| ||||| || || || ||||| ||||| ||||| |||
Sbjct 5484 CCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCGCAGCCT 5543
Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022
| | || ||||| |||||||||||||| |||||||||||||| |||||||||| || |
Sbjct 5544 ACAAAGAAGCCGTCCTCGAACTCAACGCCTCGGACGAGCGCGGAATCGACGTCGTACGAA 5603
Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082
| |||||| | ||| || | | || || || |||| || || ||| |
Sbjct 5604 ACCGAATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGAAGATTG 5663
Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142
| || || || || || || || | || || | || |||||||| ||||| || |
Sbjct 5664 TAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCCGAACGA 5723
Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202
|||||| ||| || |||||| ||||| ||| | || || ||| ||| | |||
Sbjct 5724 TGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGTAACCAATCGAACAAAATCA 5783
Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||||| | |||||| |||||||| || | ||||
Sbjct 5784 TCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 5819
>seq305
Length=195464
Score = 134 bits (148), Expect = 2e-25
Identities = 141/183 (77%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || | ||| ||| | ||||| ||| | | || |||
Sbjct 157727 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 157669
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | |
Sbjct 157668 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 157609
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| |||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 157608 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 157549
Query 1592298 ACG 1592300
|||
Sbjct 157548 ACG 157546
>seq328
Length=1424114
Score = 116 bits (128), Expect = 5e-20
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| ||
Sbjct 198337 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 198396
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| |
Sbjct 198397 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCTAAC 198456
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || || ||||| || |||||||||| |||||||| || |
Sbjct 198457 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 198516
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || | || ||| ||||| | ||||||| |||||||||| ||||
Sbjct 198517 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 198576
Query 868931 AT 868932
||
Sbjct 198577 AT 198578
Score = 107 bits (118), Expect = 2e-17
Identities = 176/253 (70%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||| | | ||
Sbjct 198934 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 198993
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| || ||||| ||| ||||||||
Sbjct 198994 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 199053
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||| ||| || ||||||||| ||| || ||||| |
Sbjct 199054 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 199113
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || || || | |||||| || ||||||| ||||||||||||||||||
Sbjct 199114 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 199173
Query 869870 TACATCTCCCATA 869882
||||| | |||||
Sbjct 199174 TACATTTGCCATA 199186
>seq350
Length=908247
Score = 98.7 bits (108), Expect = 1e-14
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || ||||| | | ||| || || | ||| |||||| | ||| |||
Sbjct 655224 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 655165
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| | ||||| ||||||||| |||| ||| || ||||| ||||
Sbjct 655164 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 655106
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
||||| ||||||||||||| ||||||| | ||| || || | | || ||| |||||||
Sbjct 655105 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 655047
Query 1627512 CCAGCGGCCG 1627521
|||| || ||
Sbjct 655046 CCAGAGGTCG 655037
>seq121
Length=448554
Score = 93.3 bits (102), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| ||||| || ||||| |||||| |||||| || ||||||| || |||
Sbjct 429706 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 429647
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||||||||| | || ||| | ||||| ||||||||||| || || || ||
Sbjct 429646 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 429587
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201
|| || || || ||||| ||| || |||| |||
Sbjct 429586 AAAGGCTTTGAATTTGGCTCCGGCTTCGGCGGATGC 429551
>seq361
Length=891876
Score = 91.5 bits (100), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| ||||
Sbjct 169729 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 169788
Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049
|||||||||||||| | ||||||
Sbjct 169789 GATAGGCGCGCATGATGATGCAAAG 169813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107108671937924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |