Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236475.1_202017-07- 28] 296 sequences; 30,157,647 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq228 156 6e-33 >seq228 Length=310920 Score = 156 bits (172), Expect = 6e-33 Identities = 733/1150 (64%), Gaps = 22/1150 (2%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| || |||||||| || || || ||||||| | | | | || | || || ||| Sbjct 234681 GCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCTGGAGCAGAGTACTCCATGATCTCA 234740 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| | |||| | ||||||||| || | ||| | ||||| ||||| ||| Sbjct 234741 GTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCTCTTGCGGTTGGCG 234800 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 || ||||| || ||||| || || || || || || |||| | || | ||| || | | Sbjct 234801 GCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATAC 234860 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGTATTGTGTA 71934 || | |||| | | | | | ||| |||||| || || | Sbjct 234861 CATATTTTCTGAGCACGAACCGTCTCACGG---CCCTTGCCTTCTCTCTCATAACGCTCG 234917 Query 71935 TATAA-TCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 || | || || ||||||||| || || ||| | ||||| ||||| || || || Sbjct 234918 TACAGCTCCTT-GAACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTGGGGCA 234976 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||||| | ||| || | | | || || | |||||||||||| |||||||| || Sbjct 234977 CATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAG 235036 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 ||| || | ||| | | | | || || ||||| ||||| ||| || | Sbjct 235037 AGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCAT 235096 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 |||| ||| | || | ||||||||| || | ||| ||||| | | | || || || || Sbjct 235097 GAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTT 235156 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||| || ||||| || | ||| | ||| ||||| ||||| |||| | |||||| | || Sbjct 235157 GTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAG 235216 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA- 72292 ||| ||||||| || || || ||| || || || |||| | || ||| || Sbjct 235217 ACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTGAAC 235276 Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 ||| ||||| || || || || | || ||||| | || ||| || | ||||| | Sbjct 235277 ATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGT 235335 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||| || || || || |||||| ||||| | | || ||| || | | || | Sbjct 235336 AGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAG---GATGCTAGCTG-C 235391 Query 72413 GACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | || || || ||| | || | || || ||||| || || || | || ||| Sbjct 235392 GCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGAC 235451 Query 72469 A-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGAC 72527 | |||| ||||| |||||||| |||| ||| || || ||| || || || || || Sbjct 235452 ATGTAG-TTGTATGTCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCGACAGCCAC 235510 Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGA 72587 |||||| | ||| || || ||||| || | | |||| | ||| | | | ||| || Sbjct 235511 ACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCGTCAATTCTGAGAAGGTATGA 235570 Query 72588 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 72647 | |||| ||| || || || || || | ||| ||||| || || || | ||| | Sbjct 235571 TCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCATAGACAATGGC 235630 Query 72648 CGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCG 72706 ||| || || | ||| | || | || | | || | || ||| || || | Sbjct 235631 CGAGTTCAGCTCATCTGAGTGCTTCATGACGGTCGCGTACGT-CTCCTCTGAGATCATGG 235689 Query 72707 GAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAA 72766 ||| | || || | || ||||| | || | ||| ||||| | || || | Sbjct 235690 GAGCCTTCTTGCCCGTCTTTGGATTGATGTATGCGTATAGATCCTGGACAACAGCAGAGA 235749 Query 72767 ATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCAT 72826 || | || || || | |||||| || || || ||||| || | ||||| || || |||| Sbjct 235750 ATTGCTTCTTGGTCTGCTTGTGGAGGTTGGACACGGCGATACGCGCGGCGAGGATCGCAT 235809 Query 72827 AATCTGGATG 72836 ||||||| || Sbjct 235810 AATCTGGGTG 235819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136716784960