Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236475.1_202017-07- 28] 296 sequences; 30,157,647 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq228 304 3e-77 seq177 89.7 1e-12 seq286 87.8 5e-12 seq221 86.0 2e-11 >seq228 Length=310920 Score = 304 bits (336), Expect = 3e-77 Identities = 1157/1795 (64%), Gaps = 52/1795 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTGTTGA 363449 ||||| | ||||| ||||| ||| ||||| |||| | || | || | ||| || Sbjct 235594 TTCGGCTTCAAGACTCTGGAGCGATCATACCT-TCTCAGAATTGACGGCAAGGTTGCCGA 235536 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | ||||| || ||| | |||||||| ||| | || || ||| | || |||| || Sbjct 235535 GAGACCGCAACAGATGATCATGCGTGTGGCTGTCGGCATTCATGGGGAAGACATTGAAGC 235476 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCTCGT----GTA-TTCACGCACGCCACGCCA 363564 |||||||| ||||| || ||| || |||| ||| ||||| || || ||||| Sbjct 235475 AGCGATTGAGACATACAA----CTACATG-TCGTTGAAGTACTTCACACATGCTTCGCCA 235421 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 ||| | | || |||||| || | | | ||| | | || ||||| | | ||| Sbjct 235420 ACACTTTTCAGTGCTGGTACCCCACAGGCGCAGCTAGCATCCTGCTTCTTGGTGGCCATG 235361 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 ||||| || ||| || ||||||| || || || |||| ||||| | || |||||| Sbjct 235360 AAGGATGACAGCATTGATGGTATCTACGATACCCTCAAGATATGTGCCATGATCTCCAAG 235301 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743 || || ||||| |||||| | | ||||| | | || |||| | |||||| | Sbjct 235300 AACGCTGGCGGTATTGGTCTTCATGTTCACAACATCAGGGCCACAGG-CTCATACATTGG 235242 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 ||||||| || || || || || || || ||||| || || | | |||| ||||| Sbjct 235241 CGGCACAAACGGCACATCCAACGGTCTTGTACCAATGCTACGAGTCTATAACAACACTGC 235182 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | ||||| ||||||||||| ||||| ||| || ||||| || || || ||||| Sbjct 235181 TCGTTACGTTGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTTGCCATCTACCTTGAGCC 235122 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 ||||| || | | |||| | || || || || ||| ||||| || ||| | Sbjct 235121 GTGGCATGCAGACGTCATGCAGTTCATGGACCTTCGCAAGAACCATGGAAAGGAAGAAGT 235062 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||||| || ||| ||||||| || || ||| || | || | |||||| |||| || || Sbjct 235061 TCGTGCGCGCGATTTGTTCTACGCTCTCTGGATTCCCGATCTCTTTATGCAGCGTGTCGA 235002 Query 363984 GGCAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 ||| | | |||| | || | ||||| ||||||| || ||||| || ||||| | Sbjct 235001 -ACAGAACGGCACTTGGACTCTGATGTGCCCCAACGAATGCCCTGGTCTGTCGGATGTTT 234943 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 |||||||| | | || ||||| ||||| || || |||| ||| ||| Sbjct 234942 ACGGTGACGAGTTCAAGGAGCTGTACGAGCGTTATGAGAGAGAAGGCAAGGGCCGTGAGA 234883 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | ||| || ||||| |||||| ||| || | || |||||| ||||| || |||| Sbjct 234882 CGGTTCGTGCTCAGAAAATATGGTATGCTATTCTCGAGGCGCAGACCGAGACCGGCACAC 234823 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | | || ||||||| || | |||||||||| ||| ||| || | ||||| || | Sbjct 234822 CTTTCATTCTGTACAAGGACGCCGCCAACCGCAAGAGCAATCAGAAGAATCTTGGCACCA 234763 Query 364223 TTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 ||| ||||| || | || || ||||| || || ||| | ||||| || ||| | Sbjct 234762 -TCA--AGAGCTCTAATTTGTGCACTGAGATCATGGAGTACTCTGCTCCAGATGAGGTCG 234706 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--------AAAAGATGGTAC 364331 | || || || || || ||| | || || || | | || | || ||| Sbjct 234705 CTGTCTGCAATCTGGCTTCGCTTGCTCTGCCCACCTACGTCGACATCGAGAACGAGGT-- 234648 Query 364332 TTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGT 364391 ||||||| | || | ||| | || || ||| | | || | || || ||||| Sbjct 234647 TTTTGACTTCAAGAAACTTCACGAGGTCACCAAAGTGGTCACACGTAACCTGAACAAGAC 234588 Query 364392 TATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCC 364450 ||||| | || || || ||| | || || || ||| | | || | || || || | Sbjct 234587 CATCGAGATCAACTACTACCCAGTACCAGAGGCACGAAAGAGC-AACTTCCGCCACCGAC 234529 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | |||||||||||||| | || || ||||| | || || ||| ||| |||| | Sbjct 234528 CCATTGGTCTTGGTGTCAACGGTCTTGCTGATGCCTTCTTGGCTCTCCGCATGCCATTCG 234469 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | |||||||| || | || |||| |||| ||||| || || ||| ||| || Sbjct 234468 ACTCGCCTGAGGCCAAGGAGCTTAATATCCAGATTTTTGAGACCATCTATCATGCTGCTC 234409 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 | ||||| || || | || | | || ||| || || || || | Sbjct 234408 TTGAGGCTTCATGCGAGCTTGCTGAGAAGCTCGGTCCTTACGAGACATACCCAGGCTCTC 234349 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 | | |||||||| | |||||| || | ||| || || | | || ||| Sbjct 234348 CAGTATCGCAGGGCGAGCTCCAGTACGACATGTGGGGCAAGACTCCTACCGACCTCTGGG 234289 Query 364691 ACTGGGATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTC---CC 364741 |||||| ||| || ||| | |||| |||| ||| |||||||| | Sbjct 234288 ACTGGG--CCGC-AC---TCAAGGGCAAGATCGCCCAGCACGGTGTGCGCAACTCGCTTC 234235 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 ||||| ||||| ||||| || || || || | |||||| | || |||||||||| Sbjct 234234 TCGTT---GCGCCGATGCCAACAGCCTCGACCTCGCAGATCATGGGCTTTAACGAGTGCT 234178 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||| || | |||||||| |||| || || || || | | || || || | ||| | Sbjct 234177 TCGAGCCATACACAAGCAACATTTACTCTCGTCGTGTGTTGGCTGGCGAGTTCCAGGTCG 234118 Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921 | || | || | |||||||| |||||| || || ||| || | |||||||| Sbjct 234117 TCAACCCATGGCTTCTGAAGGATCTCGTCGACCGTGGCCTCTGGTCAGAGAACATGAAGA 234058 Query 364922 ACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGA 364981 || |||||||| | ||||| || | ||| ||| || ||||||| || || | Sbjct 234057 ACCGCATCATCGCTGACAATGGCTCCATTCAGCGCATCCCCAACATTCCAGACGACCTCA 233998 Query 364982 AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCG 365041 || | | ||||| ||||| ||||| || | ||| | || | | ||||| || | Sbjct 233997 AGGCACTCTACAAGACCGTCTGGGAGATCAGCCAGCGTAACATCGTGCAGATGGCTGCTG 233938 Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101 | || |||||||||||| ||| ||| || ||| | |||| |||||||| Sbjct 233937 ACCGTGGTGCTTTTATCGACCAGTCTCAGAGCTTGAACATCCATATGAAGGAGCCAACCA 233878 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| |||| |||||| ||| || ||||| |||||| ||||| || Sbjct 233877 TGGGCAAGATTACCAGCATGCACTTCGCTGGTTGGAAGCTCGGTCTCAAGACTGG 233823 >seq177 Length=462105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTT-CATTCGCGGAACGTCT 22496 ||||| || |||||| || |||||| |||| |||| ||||||| ||||| Sbjct 265864 AAGGCTGACTGGGCGTTGCGATGGATTTCTGACAA-GAACTCGACATTCGCCCTCCGTCT 265806 Query 22497 TATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTG 22556 ||||||||||| | ||||| || || ||||| |||||| | ||| ||| ||||| || Sbjct 265805 CATTGCATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTG 265746 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 ||| || ||||||| | ||| | || || || || || || ||| | || ||| || Sbjct 265745 GCTGAAGAAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGA 265686 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||| | || || || || || || Sbjct 265685 TGAGGGCATGCACACAGACTTCGCCTG 265659 >seq286 Length=914684 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 65871 GTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACG 65930 |||||| | || | ||| || ||| ||| ||||| ||||| || |||| ||| Sbjct 782097 GTTACGCACAGTGCTGTCGTACTTGATCATGACTTCTTCCAAAGCCTTCACTAGACGACG 782038 Query 65931 CTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGA 65990 ||||||||||||| | | |||||| || || |||||||||| |||||||||||| || Sbjct 782037 CTGGATGTAACCAGTCTCTGCAGTCTTGACAGCGGTATCAATGAGACCTTCACGACCACC 781978 Query 65991 CATTGCAGAAAAGAAAAACTC 66011 ||| || ||||| ||||| Sbjct 781977 CATGGCGTGGAAGAAGAACTC 781957 >seq221 Length=380394 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 111415 AAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTG 111474 |||| || | || ||||| || || || || || || | ||||| || || || || | Sbjct 266604 AAAACGTCCACATCTGGGACGGCAACGGTTCGCGAGAGTACCTAGACTCCGTAGGCCTAG 266663 Query 111475 TCGACAACGA--AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 |||| ||| || ||| || ||||| || || ||||| ||||||||||| |||||||| Sbjct 266664 --GACACCGAGAAGTAGGCGACCTCGGCCCCGTCTACGGGTTTCAATGGCGGCACTTTGG 266721 Query 111533 TGCAGACTACAAAACCATGCACGAC 111557 || || ||||||||| |||||| Sbjct 266722 AGCCGAATACAAAACCTGCCACGAC 266746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348657031472