Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236475.1_202017-07-
28] 296 sequences; 30,157,647 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq228 129 9e-25
>seq228
Length=310920
Score = 129 bits (142), Expect = 9e-25
Identities = 439/669 (66%), Gaps = 14/669 (2%)
Strand=Plus/Plus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||||| |||||| |||||||| ||| || ||| | || | || || ||| ||
Sbjct 234728 CTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCT 234787
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001
||||||||| || ||||||||||| ||||| || | ||| |||| |||| | ||
Sbjct 234788 CTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTC 234847
Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC-CCTTGAGAC 205060
| ||||| ||| | || |||| || || |||| | | |||| |
Sbjct 234848 G-AGAATAGCATACCATATTTTCTGAGCACGAACCGTCT-CACGGCCCTTGCCTTCTCTC 234905
Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120
|| || ||||||| || || || |||||| || ||| ||| || || |||
Sbjct 234906 TCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAACATCCGACAGACCAGGGCAT 234965
Query 205121 TTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179
| ||||| |||||||||| ||| | | | || | || || | || |||||| || ||
Sbjct 234966 TCGTTGGGGCACATCAGAGTCCAAGTGCCGTTC-TGTTCGACACGCTGCATAAAGAGATC 235024
Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239
| ||||| || |||| |||| ||| || || | || | | || | |||| |||||||
Sbjct 235025 GGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTT 235084
Query 205240 TTTCAAGTCCAGCCAAGCCGCA--ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297
| ||||| | | ||| | ||| || ||||||||||| | | | ||| |
Sbjct 235085 GCGAAGGTCCATGAA--CTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAA 235142
Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357
|| ||||| | |||||| ||||||||||| || |||| | ||| | |||||
Sbjct 235143 GCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACTCGT 235202
Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417
||||| || || |||||||||| || ||||| |||| | ||| |||||| |||
Sbjct 235203 AGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCC 235262
Query 205418 CTCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CT 205475
|| | |||| || | | ||||| ||||||| ||||| |||| ||| || |
Sbjct 235263 CTGATGTTGTGAACATGAAG-ACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATAT 235321
Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535
|||| || || |||||| || | ||| || ||| || | ||||| |||| |
Sbjct 235322 CTTG-AGGGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGG 235380
Query 205536 AAGCCAGCT 205544
| || ||||
Sbjct 235381 ATGCTAGCT 235389
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/330 (66%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244
||||||| || ||| || || || | || ||| | || | | | | |||| | ||| ||
Sbjct 234111 GGGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTAT 234170
Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304
|| ||||| |||||| ||| | ||||| | ||| ||| || ||||| || ||
Sbjct 234171 GGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 234230
Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364
| ||| || |||||||||||||||| | || | ||| ||| || | || ||||||
Sbjct 234231 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTGAGTGCGGCCCAGTCC 234290
Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424
| | | || || ||||||||||||| |||| | ||| || |||||
Sbjct 234291 CAGAGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTGGAGCTCGCCCTGCGATACTGGA 234350
Query 204425 CTGCCCTTGTACGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
||| ||| ||| ||||| | || | || || || |||| ||| || || | |
Sbjct 234351 GAGCCTGGGTATGTCTCGTAAGGACCGAGCTTC-TCAGCAAGCTCGCATGAAGCCTCAAG 234409
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513
|| || || ||||||||||| |||||
Sbjct 234410 AGCAGCATGATAGATGGTCTCAAAAATCTG 234439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795152257925760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |