Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236475.1_202017-07- 28] 296 sequences; 30,157,647 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq232 156 7e-32 seq177 152 8e-31 seq227 118 2e-20 seq228 89.7 8e-12 seq111 86.0 1e-10 >seq232 Length=261007 Score = 156 bits (172), Expect = 7e-32 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||| ||||| || ||||||||| |||| ||||| ||| ||| Sbjct 145363 GTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCAAGTTCACCGGGCAG 145422 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| ||||||| |||||||| ||||| | ||| || |||||| || | Sbjct 145423 GATCAGTCGCACGGATGTCTGGATTTCGCGCGATGAGATGGTCGACTTCTTGTT-GTATG 145481 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | |||||||| ||| ||| |||| ||||||||||| || ||||||| Sbjct 145482 CAGCGAGCTTGGATGCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 145541 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| ||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 145542 GGATGGACATGGCGCGGTTGGAGATACCGGTGTCTGGGTGAACCTGCTTGAGGAC 145596 >seq177 Length=462105 Score = 152 bits (168), Expect = 8e-31 Identities = 324/482 (67%), Gaps = 4/482 (1%) Strand=Plus/Minus Query 2018914 TCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACG 2018973 |||| || | |||||||||||||| | ||||||||||| || |||||| | Sbjct 61555 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 61496 Query 2018974 CCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGG 2019033 || | | |||||| | ||| |||||||||||||| || | | | | | Sbjct 61495 CCATCGAACGCCTCAAAATCATCGCCAAAGACGGCAACATGCCACACGTAATCATCTCCG 61436 Query 2019034 GCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCG 2019093 || |||||| | ||||| ||||| || ||||| |||||| ||||| |||| Sbjct 61435 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCG 61376 Query 2019094 CGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCG 2019153 | ||| | | || ||||| ||||||||||| || || ||||||||||| | ||||||| Sbjct 61375 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCCGACGAGCGCGGAATCGACGTCG 61316 Query 2019154 TGCGTAGAATCATCAA--GCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCA 2019211 | || | ||||| || || ||| ||||| || || || |||| || || Sbjct 61315 TACGAAACCGAATCAAGGGCTTCGCGC--AGAAAAAGGTCACACTCCCCGCCGGGCGGCA 61258 Query 2019212 CAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCG 2019271 ||| | | || || ||||| || || || | || || | || |||||||| || || Sbjct 61257 GAAGATTGTAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCG 61198 Query 2019272 ATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTC 2019331 || ||||||| |||| || |||||| || || || | || |||||| ||| Sbjct 61197 CCGAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGCAACCAATCGAA 61138 Query 2019332 GATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGA 2019391 | ||||||| | || || || ||||| ||||| |||| |||||| |||||||| Sbjct 61137 CAAAATCATCGAGCCTCTTCAATCGCGCTGCGCAATCTTACGCTATGCGCGACTCACCGA 61078 Query 2019392 CG 2019393 || Sbjct 61077 CG 61076 Score = 127 bits (140), Expect = 3e-23 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| |||||| |||||||||||||| | | Sbjct 265357 TGACACCAGCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 265416 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 |||| || |||||| | ||| ||||||| | |||| ||||| | |||| Sbjct 265417 GCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGA 265476 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || ||||| |||||||||||||||||||| || |||||||| | ||||||| Sbjct 265477 GTGCCAACAGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCA 265536 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | || | ||| || || | || | | ||||| | ||||||| |||||||| Sbjct 265537 TCCCCAGAAGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCT 265596 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 265597 CGGTGATGAT 265606 >seq227 Length=313407 Score = 118 bits (130), Expect = 2e-20 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 || ||| | |||||||||||||||||| | || |||||| | || ||||| | || ||| Sbjct 164054 TTCGAGATCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGC 164113 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 ||||| || |||||| | ||||||||||||||||| || || ||||| ||||| || ||| Sbjct 164114 AAGACAGTCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAAC 164173 Query 2035752 ATCAAGTACG 2035761 || || ||| Sbjct 164174 ATTCAGAACG 164183 >seq228 Length=310920 Score = 89.7 bits (98), Expect = 8e-12 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATG 2069661 ||||||| || || ||||| | | ||| || || | ||| |||||||| ||| ||| Sbjct 234112 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 234171 Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721 | ||| | |||| | ||||| ||||||||| |||| ||| || ||||| |||| Sbjct 234172 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 234230 Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACT-GTCGCACCAGCGCCCGCAGGGCGTCCCAGTC 2069780 ||||| ||||||||||||| |||| || | || | || || || ||| ||||||| Sbjct 234231 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGC-CCTTGAGTGCGGCCCAGTC 234289 Query 2069781 CCAGCGGCCG 2069790 |||| || || Sbjct 234290 CCAGAGGTCG 234299 >seq111 Length=1654890 Score = 86.0 bits (94), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369 |||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| |||| Sbjct 984653 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 984712 Query 2175370 CATAGGCGCGCATGA 2175384 |||||||||||||| Sbjct 984713 GATAGGCGCGCATGA 984727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916214913129944