Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236475.1_202017-07- 28] 296 sequences; 30,157,647 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq228 140 5e-28 seq177 131 2e-25 >seq228 Length=310920 Score = 140 bits (154), Expect = 5e-28 Identities = 462/715 (65%), Gaps = 10/715 (1%) Strand=Plus/Plus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || || || || ||||||| || |||||| ||||| || || ||||||| | ||| Sbjct 234930 AACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAA 234989 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || | | | || || | |||||||||||| || ||||| ||||| || | | Sbjct 234990 GTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAA 235049 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | | | |||||| ||||| ||||| ||| || | ||||| ||| | Sbjct 235050 TCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGACG 235109 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || | |||||| || || || || || || | | |||| || || || || || ||||| Sbjct 235110 TCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGG 235169 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | || | |||||||| ||||| |||| | |||||| | || ||||| ||||| Sbjct 235170 TCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCGTTGGATGTG 235229 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || ||||| || ||| || || || | || || || | || || || Sbjct 235230 CCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTGAACATGAAGACCAATA 235289 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || | || ||||| | ||||| || | || || ||||| || || || Sbjct 235290 CCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGATACCATCAATG 235349 Query 76943 CTATCATCCATCATG----TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || |||||| ||||| |||||| | ||||| || || || || Sbjct 235350 CTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG----CTGCGCCTGTGGGGTACC 235405 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057 ||| | || | ||| || || ||||| ||||| | || || | |||| ||||||| Sbjct 235406 AGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAG-TTGTATG 235464 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | ||||| ||||||| || || |||||| || ||||| |||||||| | ||| | Sbjct 235465 TCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCGACAGCCACACGCATGATCATCT 235524 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | || |||| || || ||| | ||| | | | ||||||| |||| ||| | Sbjct 235525 GTTGCGGTCTCTCGGCAACCTTGCCGTCAATTCTGAGAAGGTATGATCGCTCCAGAGTCT 235584 Query 77178 TAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 | || || || || | ||| ||||| | || || | ||| |||| || || Sbjct 235585 TGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCATAGACAATGGCCGAGTTCAG 235639 >seq177 Length=462105 Score = 131 bits (144), Expect = 2e-25 Identities = 343/517 (66%), Gaps = 10/517 (2%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || ||||||||||| | ||| || ||||| || || ||||| || ||||| || Sbjct 265701 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 265760 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||||||||| ||||| || || || || || || ||||| | || | || | Sbjct 265761 AAAGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAAT 265820 Query 46792 CTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | | || | | ||||| | ||||| |||||||| | | || || Sbjct 265821 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 265880 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || | || || ||||| || || | || | | || | | |||||||| Sbjct 265881 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCG 265940 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | ||| ||| | || || || ||||| || || ||||| || ||||| || Sbjct 265941 ATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 266000 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCAC 47027 |||| ||| || | ||||| ||||| | | || || || ||| | ||||| || || Sbjct 266001 CATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTC-GACGAGGTTCTCGTTGAC 266059 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG-- 47085 || ||||| || || || ||||| | || ||| || || || ||| ||| Sbjct 266060 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 266119 Query 47086 GT--AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 || |||| | || |||||||| | || ||| || || | ||| | || |||||||||| Sbjct 266120 GTTGAGTC-GCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCC 266178 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||||| ||||| || ||||| ||||| | |||||| Sbjct 266179 AGAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 266215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931762142720