Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236485.1_202017-07-
28] 343 sequences; 30,616,651 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq198 307 1e-78
seq33 152 5e-32
seq332 123 3e-23
seq54 93.3 4e-14
>seq198
Length=423218
Score = 307 bits (340), Expect = 1e-78
Identities = 556/796 (70%), Gaps = 23/796 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | |||||| | || |||
Sbjct 265167 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 265108
Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | ||| | |||||| |||| || ||||||
Sbjct 265107 TCGAAGGATCTCCA-CGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTC 265049
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || |||||||| ||| ||||| ||||||||||| || ||||||||
Sbjct 265048 ACACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCG 264989
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| |||| | |||||||| | | ||||| || |||||||||||||| |||||| |
Sbjct 264988 CTTCAGCTCTG-AGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 264930
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928
|||||||| | ||||| || | ||||| |||||||| || ||| | ||| |
Sbjct 264929 TGGAGAACATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAA 264870
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | ||| | | |||| || |||||||| | || || ||| || ||||||
Sbjct 264869 AGCAGCGAACATAC--CTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGGC 264812
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047
|| |||||| |||| ||||| | | || ||| || | |||| | || || | |
Sbjct 264811 TGACTGGGCGTTGCGATGGATTTCTGACA-AGAACTCGACATTCGCCCTCCGTCTCATTG 264753
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| || || ||||| ||||| ||||||| || || ||| || || || || ||||| |
Sbjct 264752 CATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 264693
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
||||||| || |||||| |||| || || ||| ||||||||||||||| | || ||||
Sbjct 264692 AGAAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGG 264633
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| |||| ||||| ||||| | |||||| |||| || | | |||| | ||
Sbjct 264632 GCATGCACACAGACTTCGCCTGCCTTCTGTTCTCGCATCTGAAGAACAAGCCGAACCAGG 264573
Query 117228 CGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
| | || ||| | ||| ||||||| || ||| | ||||||||| ||| | || ||
Sbjct 264572 CCCTTGTGCAGAG-CATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACAGAC 264514
Query 117287 GCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345
|| || || ||| || ||||| | || | ||||| |||||||| || ||
Sbjct 264513 GCTCTTCC-ATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATT 264455
Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGCCCAA 117402
||||||||| | || ||| | | | ||||| |||| | ||||||| | ||||
Sbjct 264454 CGTCGCCGATCGCCTACTGTTGGCAC---TCGGCAACAAGAAGTTCTACAACGCCACCAA 264398
Query 117403 CCCGCTGGACTTTATG 117418
||| | ||||| |||
Sbjct 264397 CCCCTTCGACTTCATG 264382
>seq33
Length=763136
Score = 152 bits (168), Expect = 5e-32
Identities = 165/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | ||
Sbjct 708525 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCC 708584
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| ||| || | ||||| ||||||||||| |||||||
Sbjct 708585 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 708643
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| || || || || |||||
Sbjct 708644 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAA 708703
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| |||| ||||| | ||| ||||
Sbjct 708704 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 708739
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| ||| |
Sbjct 708297 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 708356
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||| ||||| | ||||||
Sbjct 708357 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 708416
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || ||||| ||||| || || | || || || |||||||||
Sbjct 708417 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCGGACTACAAC 708476
Query 40870 ATCCAGAAGGA 40880
|||||||| ||
Sbjct 708477 ATCCAGAAAGA 708487
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||| ||| |||| || || | |||||| | | | | | |||
Sbjct 708091 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTGAAGA 708150
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | || || || ||||| || | ||||||||||| | || | ||| ||||
Sbjct 708151 GCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGGCA 708210
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || |||| |||||||| |||||||||||| ||||||||| ||| || |
Sbjct 708211 AGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGCACTCTCC 708270
Query 40892 ATCTAGT 40898
|||| ||
Sbjct 708271 ATCTCGT 708277
>seq332
Length=871922
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
|||||||| || ||||| ||||| |||||||| |||| ||||| | | ||||| | |
Sbjct 250578 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 250637
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| ||||| ||||| |||||||||| || |
Sbjct 250638 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTTTG 250697
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||| |||| || | ||||||||| |||||||||||||||||||
Sbjct 250698 ATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAG 250757
Query 40879 G 40879
|
Sbjct 250758 G 250758
>seq54
Length=751958
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || || |||||||||| || | |||| ||| ||||| ||||| ||
Sbjct 4623 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 4682
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | ||||||||| |||||||||||| ||||||||| ||| || || || ||
Sbjct 4683 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGCACCCTCCACCTCGT 4738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216990997680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |