Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236485.1_202017-07- 28] 343 sequences; 30,616,651 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq87 109 5e-19 seq33 93.3 4e-14 >seq87 Length=565143 Score = 109 bits (120), Expect = 5e-19 Identities = 383/583 (66%), Gaps = 19/583 (3%) Strand=Plus/Minus Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791 |||||||| |||||||| ||||||||||| || ||| | ||||||||||| |||| Sbjct 64879 TGATTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTC 64820 Query 153792 TGAATTTCTATAATAG--TACGCATCAATG-TGACCGCGGGCATTTGATCGCGAAACTGG 153848 || || | ||||| ||| ||| | ||| | || | | || || || | Sbjct 64819 TGCGCCTCGAGAATAGCATAC-CATATTTTCTGAGCACGAACCGTC--TCACGGCCCTTG 64763 Query 153849 CCCTTGTCT-TCGTAGTGTTTGTACCAGTATTCAAACTCATCACC--AAACGTATTGTTA 153905 || || ||| || || | | |||| | | ||||| ||||| |||| || Sbjct 64762 CC-TTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAAC--ATCCGAC 64706 Query 153906 AGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGC 153965 || | || ||||||||||| |||||||| | ||| ||| || | || || || || Sbjct 64705 AGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGC 64646 Query 153966 ATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTG 154025 ||||| | |||||||| ||| || |||| | || |||||||| ||||| | Sbjct 64645 ATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTT 64586 Query 154026 CCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAA 154085 ||| ||| || | || | || | ||| | ||| ||||||||| || | ||| Sbjct 64585 CCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAG 64526 Query 154086 ACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTG 154142 | || ||| ||| |||| ||||| ||||| | |||| ||| | | ||||| Sbjct 64525 ATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTA 64466 Query 154143 AAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT 154201 | || || ||||| |||| |||||| ||| || |||||||| ||| | || Sbjct 64465 TAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAG 64406 Query 154202 GTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261 || |||| | | | ||| || | | ||||||||||| ||| ||||||||||| Sbjct 64405 CCTGTGGCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCAT 64347 Query 154262 GGCGCA-ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303 ||| || ||| || | || | ||||||||| |||||| || Sbjct 64346 GGCACATATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 64305 >seq33 Length=763136 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || ||||| | || ||||| || || ||||| ||||| Sbjct 708754 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 708695 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| | ||| || ||||| || || || |||| ||||| ||||| || || Sbjct 708694 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 708635 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| ||| || | | || | ||||||| | ||| Sbjct 708634 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 708575 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||||||||| | || || ||||| ||||||||| Sbjct 708574 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 708524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061873125600