Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236485.1_202017-07-
28] 343 sequences; 30,616,651 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq198 116 4e-21
seq33 116 4e-21
seq332 98.7 9e-16
>seq198
Length=423218
Score = 116 bits (128), Expect = 4e-21
Identities = 354/535 (66%), Gaps = 33/535 (6%)
Strand=Plus/Minus
Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAA 47115
|||| | ||| || ||| | ||||| ||||| || ||||| || | ||| || |
Sbjct 264842 TCGACAACATCCCATGCATCCGCAGGAAGGCTGACTGGGCGTTGCGATGGATTTCTGACA 264783
Query 47116 ACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCT 47175
| ||| || || || ||| ||| | || || || ||| ||| ||||| ||||||
Sbjct 264782 A-GAACTCGACATTC--GCCCTCCGTCTCATTGCATTTGCCGCCGTTGAGGGTATCTTCT 264726
Query 47176 TCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCA 47235
|||| || ||||| || || || | |||| | || | ||| |||| ||||
Sbjct 264725 TCTCTGGATCTTTTGCTGCTATCTTCTGGCTGAAGAAACGTGGTCTCATGGCCGGGCTCA 264666
Query 47236 CGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-C 47294
| || |||||||| ||||| | || || ||| ||||||| |||| ||||| || |
Sbjct 264665 CATTCTCGAACGAGCTCATCTCCCGTGATGAGGGCATGCACACAGACTTCGCCTGCCTTC 264606
Query 47295 TACTACAACACTAGAGTC-GATCAA-AAGTTGGACGTGCCCACCGT-CAGCGACATGTTT 47351
| | || | || || || ||| | || | || || ||| | ||| |
Sbjct 264605 TGTT------CTCGCATCTGAAGAACAAGCCGAACCAGGCCCTTGTGCAGAG-CATCATC 264553
Query 47352 GCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAG 47409
|||| |||||| | || ||| |||||| || | || ||||| || || |||
Sbjct 264552 ACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACAGACGCTCTTCCATGCAAGCTTC-- 264495
Query 47410 TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCG 47469
|||| |||||||| | | ||| | | ||||| ||||| |||||||| ||||| ||
Sbjct 264494 TGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCGCCGATCGCCTACTGT 264435
Query 47470 T-----TCAGCTA-AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGA 47523
| || || | ||| ||| | ||| || || || || ||||| || |||
Sbjct 264434 TGGCACTCGGCAACAAG------AAGTTCTACAACGCCACCAACCCCTTCGACTTCATGG 264381
Query 47524 ACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| ||||||||||| | |||||||||||||| ||||||||||| || ||||| ||
Sbjct 264380 AGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 264326
>seq33
Length=763136
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || || ||||| || || ||||| || |
Sbjct 708523 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCCGAC 708464
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| || || || | |||| |||||||| || || ||
Sbjct 708463 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 708404
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||||| | |||| |||||| | ||||||
Sbjct 708403 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 708344
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 708343 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 708297
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| |||||| || | || ||||| || || || |||||||| | || ||
Sbjct 708739 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGTGTCCGGCCG 708680
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | |||||||| || || || ||||||||||||
Sbjct 708679 TCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTG 708620
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|| ||| || ||||| |||| |||| ||||| | || ||||||| || |
Sbjct 708619 TCTTGGATCTTTGACTTGACGTTG-TCGATCGTGTCGGATGATTCCACTTCGAGTGTGAT 708561
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| || || || || ||||| |||||
Sbjct 708560 GGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 708525
>seq332
Length=871922
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | |||||| ||| || | ||| ||||||||| |||||
Sbjct 250756 TTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 250697
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || || |||||||||||| ||| || ||||| | |||
Sbjct 250696 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 250637
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| |||||| | |||||| |||| || | || ||||| || || || ||||| ||
Sbjct 250636 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 250578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498761290320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |