Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236485.1_202017-07- 28] 343 sequences; 30,616,651 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq87 190 3e-43 seq198 86.0 8e-12 seq43 82.4 1e-10 >seq87 Length=565143 Score = 190 bits (210), Expect = 3e-43 Identities = 884/1385 (64%), Gaps = 31/1385 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| |||||||||| || ||||| || ||| |||| ||| || | ||| || Sbjct 65507 GTAAATGTTGCTTGTGTATGGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGA 65448 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||||||||| || || | | ||| ||| || | ||| | || ||| | Sbjct 65447 GGCTGTTGGCATCGGCGCAACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCC 65388 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATGTCAAACTG 110883 |||||| | ||||||| || || | ||| | ||| |||||||||| |||| Sbjct 65387 CTTGAGTGCGGCCCAGTCCCAG---AGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTG 65331 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC--A 110941 ||| | || || || | ||||| || | || || || | ||| | ||||| | Sbjct 65330 GAGCTCGCCCTGCGATACTGGAGAGCCTGGGTATGTCTCGTAAGGACC--GAGCTTCTCA 65273 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | || || ||||| || | || ||||| ||||| ||||| || | ||| Sbjct 65272 GCAAGCTCGCATGAAGCCTCAAGAGCAGCATGATAGATGGTCTCAAAAATCTGGATATTA 65213 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | ||||||||| ||| || || |||| |||| | || |||| || ||| Sbjct 65212 AGCTCCTTGGCCTCAGGCGAGTCGAATGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGA 65153 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-AC 111120 || | ||||| | |||||| |||| ||| || | || |||||| || ||| || Sbjct 65152 CCGTTGACACCAAGACCAATGGGTCGGTGGCGGAAGTTGCTCTTTCGTGCC-TCTGGTAC 65094 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || || | || | || ||| ||| || || || || | || |||| || Sbjct 65093 TGGGTAGTAGTTGATCTCGATGGTCTTGTTCAGGTTACGTGTGACCACTTTGGTGACCTC 65034 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 |||||||| | | |||||| |||| | ||| || | || || || | Sbjct 65033 GTGAAGTTTCTTGAAGTCAAAAACCTCGTTCTCGATGTCGACGTAGGTGGGCAGAGCAAG 64974 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || |||| |||||| ||||| |||||| | | | |||||| | || || || || Sbjct 64973 CGAAGCCAGATTGCAGACAGCGACCTCATCTGGAGCAGAGTACTCCATGATCTCAGTGCA 64914 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 || || || ||||| || || || | |||||| || || ||||| |||| || || Sbjct 64913 CAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCTCTTGCGGTTGGCGGCGTC 64854 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 |||||| || ||| | || || || ||||| ||||| | | ||||||||| | ||| | Sbjct 64853 CTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATAT 64794 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGG 111479 | || | || | | ||||| | ||| | | ||| || ||| || Sbjct 64793 TTTCTGAGCACGAACCGTCTCAC-GGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCT 64735 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGA 111538 | | ||||| ||||| | || || ||||| || || || || || || | ||| Sbjct 64734 CCTTGAACTCGTCACCGTAAACATCCGACAGACCAGG-GCATTCGTTGGGGCACATCAGA 64676 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| || | || || |||| ||| || || || |||||||| || | | Sbjct 64675 GTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAG 64616 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || | ||| | ||| | ||||| | || ||||| || | || | ||||| | Sbjct 64615 AACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGC 64556 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 |||| || || ||||| |||||||| |||| || | || || | ||||| Sbjct 64555 ATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACC---TGGACGCTTGTTG 64499 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | || || || || ||| |||| | || || |||||||| | || ||| Sbjct 64498 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCG 64439 Query 111773 TCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGT 111830 | ||| || ||||| || | ||| | ||| | |||| || | | || | | Sbjct 64438 TTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTG--TGGCCCTGATGTTGTGAACAT 64381 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 | | |||||||| ||||| ||| ||||| ||||| | | || || | |||| Sbjct 64380 GAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGA 64321 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 |||| | || ||| ||||| |||| | | |||||| | | ||||| || Sbjct 64320 TACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTG 64261 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTTG 112009 | ||||||||| |||| || ||||| | || || |||| ||| | ||||| | | Sbjct 64260 GGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAG-TACTTCAACGACATGTAG 64202 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | ||||||||| | | | |||||||||||||| || ||||||| || || |||||| Sbjct 64201 TTGTATGTCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCGACAGCCACACGCATG 64142 Query 112070 AACAT 112074 | ||| Sbjct 64141 ATCAT 64137 >seq198 Length=423218 Score = 86.0 bits (94), Expect = 8e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||||| || || || || ||||| || || | ||||||||| || ||| Sbjct 264632 CCCTCATCACGGGAGATGAGCTCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTC 264691 Query 122737 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| ||| | ||||| ||| || || || ||||||||||||||||| || ||||| Sbjct 264692 TTCAGCCAGAAGATAGCAGCAAAA-GATCCAGAGAAGAAGATACCCTCAACGGCGGCAAA 264750 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTGCCCATT 122854 |||| || || |||||| | |||| ||| || || |||| || ||||| | Sbjct 264751 TGCAATGAGACGGAGGGCGAATG-TCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGT 264809 Query 122855 TCGCCTTC 122862 |||||| Sbjct 264810 CAGCCTTC 264817 >seq43 Length=758261 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 ||||||||||||||||| ||||| | ||| ||| ||||| ||||| ||| | ||||| Sbjct 613210 AGACCCTTGATGTGAGAGCCATCGTGATCCTGATCGGTCATGATCATCAGATGGCCATAA 613151 Query 182577 CG-AAG--TTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTG 182633 || ||| || || |||| |||||| || ||||| ||||| | | ||||||| Sbjct 613150 CGCAAGCCTTTAG---TATCTGTGTAGTCCTTCTTATGTTGCAGACCCAAAAACTTCTTG 613094 Query 182634 A-GATCATTGAA-CTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCT 182691 | | || |||| ||| ||| || || ||| | | ||||| || || ||||| Sbjct 613093 ATGTTC--TGAATCTCGGCGTTCTTTGAAATCTGGTCGATGGAAGCATCGCGCACATTGA 613036 Query 182692 TACATTTACCGCGAAGTGGGAACACACC 182719 | ||||| ||||||||||| ||||| Sbjct 613035 GAATCTTACCCCGAAGTGGGAAGACACC 613008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029307312800