Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236485.1_202017-07- 28] 343 sequences; 30,616,651 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq143 145 2e-29 seq209 104 7e-17 seq33 104 7e-17 >seq143 Length=466202 Score = 145 bits (160), Expect = 2e-29 Identities = 468/726 (64%), Gaps = 3/726 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| || ||||| || || || || || | | | | | ||||||| Sbjct 395952 GCAATCGGTATCGACTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGATCGC 396011 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || ||||| || ||| | ||||| || |||| ||| || || || Sbjct 396012 ATCGAGATCATCGCCAACGATCAGGGCAACCGCACAACACCCTCATTCGTCGCCTTCACA 396071 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || |||||| |||| || || || | || || ||| ||| Sbjct 396072 GACACCGAGCGTCTAATCGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCAGCAAAC 396131 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || |||||| | || || | | || ||| | ||| | Sbjct 396132 ACAGTCTTCGACGCAAAGCGATTGATCGGCCGCAAGTTCCAAGACGCAGAGGTGCAAGCA 396191 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || ||||| || | || | || | ||| || ||| | || | Sbjct 396192 GATATGAAGCACTTTCCCTTCAAGGTCATCGAGAAGGCCGGC---AAGCCAGTCATCTCG 396248 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | || || || | || || || ||| || || || || | ||| || | Sbjct 396249 GTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCCGCCATGATTCTC 396308 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | || || | || | |||| || || | | || || | Sbjct 396309 ACAAAGATGCGTGAGACCGCAGAGTCGTACCTTGGTGGCACCGTCAACAACGCCGTCGTC 396368 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || ||||| ||||| || || | ||||| ||||| || || || ||| |||| Sbjct 396369 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACCAAGGACGCCGGCCTCATT 396428 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || || ||||| ||||| ||||| || || Sbjct 396429 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCGACTGCAGCAGCCATTGCCTACGGT 396488 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | || ||| || ||| | || || || ||| | ||||||||||| Sbjct 396489 CTCGACAAGAAGACTGAGGGCGAGCGCAATGTGCTCATCTTCGATCTTGGTGGTGGTACC 396548 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || |||||||| || || ||| |||| ||||| ||||| || || || | ||||| ||| Sbjct 396549 TTCGATGTATCGCTGCTCACAATTGAGGAGGGTATTTTCGAGGTCAAGTCCACTGCCGGT 396608 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || || || || || || || ||| Sbjct 396609 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTAAACGAA 396668 Query 349919 TTTAAG 349924 || ||| Sbjct 396669 TTCAAG 396674 >seq209 Length=405951 Score = 104 bits (114), Expect = 7e-17 Identities = 244/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| | ||||| ||| | | | || ||||||||| | || || |||| | Sbjct 144704 CCAGAAGAGGTCTCATCCATGATCCTGGGCAAGATGAAGGAAGTCGCCGAGTCATACCTC 144645 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || |||| || || | || || | || || |||||||| || || || ||||||||| Sbjct 144644 GGCGAAAAGGTCACCAACGCAGTCGTCACAGTCCCAGCCTACTTCAACGACGCCCAGCGT 144585 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || || ||||||| || || || | || || || | | | || ||| Sbjct 144584 GCCGCTACCAAGGACGCTGGCACGATCGCCGGTCTCAACGTCCTCCGTGTCGTCAACGAA 144525 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || || || | || || || || || || || ||| | ||| | || Sbjct 144524 CCTACCGCCGCCGCTCTCGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 144468 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | || | |||||||||||||| ||||| || | | || | || |||| Sbjct 144467 ATTGTCTACGACCTCGGTGGTGGTACTTTCGATGTCTCCATCTTGACTGTCGACCAGGGT 144408 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| | ||||| || ||||| || ||||||||||| || || || || | Sbjct 144407 GTGTTCGAGGTTCAGGCAACGGCCGGTGACACCCATCTTGGTGGTGAGGACTTCGACCAG 144348 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 144347 CGTGTCGT 144340 >seq33 Length=763136 Score = 104 bits (114), Expect = 7e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || ||||| || ||||| || || || | Sbjct 708531 TTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGT 708472 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || ||||| || || || ||||| | Sbjct 708471 AGTCCGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGT 708412 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||| || || | || ||||| || || | || | || Sbjct 708411 CAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTG 708353 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 708352 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 708297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247740930429