Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236515.1_202017-07- 28] 141 sequences; 30,033,957 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq80 105 7e-18 seq49 93.3 4e-14 >seq80 Length=246247 Score = 105 bits (116), Expect = 7e-18 Identities = 265/397 (67%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 153912 GGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAAT 153971 || ||||||||||| |||||||| | ||| ||| || | || || || ||||||| Sbjct 192277 GGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAG 192336 Query 153972 ATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATG 154031 | |||||||| ||| || |||| | || |||||||| ||||| | ||| | Sbjct 192337 AGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGG 192396 Query 154032 TTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCT 154091 || || | || | || | ||| | ||| ||||||||| || | ||| | || Sbjct 192397 TTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCA 192456 Query 154092 TGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACC 154148 ||| ||| |||| ||||| ||||| | |||| ||| | | ||||| | || Sbjct 192457 AAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACT 192516 Query 154149 CGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCG 154207 || ||||| |||| |||||| ||| || |||||||| ||| | || || | Sbjct 192517 CGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTG 192576 Query 154208 GCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCA 154267 ||| | | | ||| || | | ||||||||||| ||| |||||||||||||| || Sbjct 192577 GCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACA 192635 Query 154268 -ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303 ||| || | || | ||||||||| |||||| || Sbjct 192636 TATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 192671 >seq49 Length=732227 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || ||||| | || ||||| || || ||||| ||||| Sbjct 363887 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 363946 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| | ||| || ||||| || || || |||| ||||| ||||| || || Sbjct 363947 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 364006 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| ||| || | | || | ||||||| | ||| Sbjct 364007 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 364066 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||||||||| | || || ||||| ||||||||| Sbjct 364067 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 364117 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || ||||| || ||||| || ||| | Sbjct 364118 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 364177 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || || ||| | ||||| || ||||| || || || Sbjct 364178 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 364237 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | |||||| ||| ||| ||| Sbjct 364238 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 364297 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 364298 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATA 364345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063125687200