Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236515.1_202017-07-
28] 141 sequences; 30,033,957 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq80 105 7e-18
seq49 93.3 4e-14
>seq80
Length=246247
Score = 105 bits (116), Expect = 7e-18
Identities = 265/397 (67%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 153912 GGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAAT 153971
|| ||||||||||| |||||||| | ||| ||| || | || || || |||||||
Sbjct 192277 GGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAG 192336
Query 153972 ATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATG 154031
| |||||||| ||| || |||| | || |||||||| ||||| | ||| |
Sbjct 192337 AGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGG 192396
Query 154032 TTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCT 154091
|| || | || | || | ||| | ||| ||||||||| || | ||| | ||
Sbjct 192397 TTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCA 192456
Query 154092 TGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACC 154148
||| ||| |||| ||||| ||||| | |||| ||| | | ||||| | ||
Sbjct 192457 AAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACT 192516
Query 154149 CGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCG 154207
|| ||||| |||| |||||| ||| || |||||||| ||| | || || |
Sbjct 192517 CGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTG 192576
Query 154208 GCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCA 154267
||| | | | ||| || | | ||||||||||| ||| |||||||||||||| ||
Sbjct 192577 GCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACA 192635
Query 154268 -ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303
||| || | || | ||||||||| |||||| ||
Sbjct 192636 TATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 192671
>seq49
Length=732227
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||||| || ||||| | || ||||| || || ||||| |||||
Sbjct 363887 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 363946
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| ||| | ||| || ||||| || || || |||| ||||| ||||| || ||
Sbjct 363947 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 364006
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| ||| || | | || | ||||||| | |||
Sbjct 364007 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 364066
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | || || ||||| |||||||||
Sbjct 364067 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 364117
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || || ||||| || ||||| || ||| |
Sbjct 364118 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 364177
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | || |||||||| || || ||| | ||||| || ||||| || || ||
Sbjct 364178 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 364237
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | |||||| ||| ||| |||
Sbjct 364238 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 364297
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||||||||| | || || ||||| || ||||||
Sbjct 364298 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATA 364345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063125687200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |