Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236515.1_202017-07-
28] 141 sequences; 30,033,957 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq49 122 8e-23
seq55 120 3e-22
seq53 98.7 9e-16
>seq49
Length=732227
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || || ||||| || || ||||| ||| |
Sbjct 364118 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 364177
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| || || || | |||| |||||||| || || ||
Sbjct 364178 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 364237
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||||| | |||| |||||| | ||||||
Sbjct 364238 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 364297
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 364298 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 364344
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| |||||| || | || ||||| || || || |||||||| | || ||
Sbjct 363902 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGTGTCCGGCCG 363961
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | |||||||| || || || ||||||||||||
Sbjct 363962 TCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTG 364021
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|| ||| || ||||| |||| |||| ||||| | || ||||||| || |
Sbjct 364022 TCTTGGATCTTTGACTTGACGTTG-TCGATCGTGTCGGATGATTCCACTTCGAGTGTGAT 364080
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| || || || || ||||| |||||
Sbjct 364081 GGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 364116
>seq55
Length=2050790
Score = 120 bits (132), Expect = 3e-22
Identities = 355/535 (66%), Gaps = 33/535 (6%)
Strand=Plus/Minus
Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAA 47115
|||| | ||| || ||| | ||||| ||||| || ||||| || | ||| || |
Sbjct 265642 TCGACAACATCCCATGCATCCGCAGGAAGGCTGACTGGGCGTTGCGATGGATTTCTGACA 265583
Query 47116 ACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCT 47175
| ||| || || || ||| ||| | || || || ||| ||| ||||| ||||||
Sbjct 265582 A-GAACTCGACATTC--GCCCTCCGTCTCATTGCATTTGCCGCCGTTGAGGGTATCTTCT 265526
Query 47176 TCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCA 47235
|||| || ||||| || || || | |||| | || | ||| |||| ||||
Sbjct 265525 TCTCTGGATCTTTTGCTGCTATCTTCTGGCTGAAGAAACGTGGTCTCATGGCCGGGCTCA 265466
Query 47236 CGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-C 47294
| || |||||||| ||||| | || || ||| ||||||| |||| ||||| || |
Sbjct 265465 CATTCTCGAACGAGCTCATCTCCCGTGATGAGGGCATGCACACAGACTTCGCCTGCCTTC 265406
Query 47295 TACTACAACACTAGAGTC-GATCAA-AAGTTGGACGTGCCCACCGT-CAGCGACATGTTT 47351
| | || | || || || ||| | || | || || ||| | ||| |
Sbjct 265405 TGTT------CTCGCATCTGAAGAACAAGCCGAACCAGGCCCTTGTGCAGAG-CATCATC 265353
Query 47352 GCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAG 47409
|||| |||||| | || ||| |||||| || | || ||||| || || |||
Sbjct 265352 ACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACAGACGCTCTTCCATGCAAGCTTC-- 265295
Query 47410 TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCG 47469
|||| |||||||| || | ||| | | ||||| ||||| |||||||| ||||| ||
Sbjct 265294 TGGGGATGAACGCTGACCTCATGTCACAATACATTGAATTCGTCGCCGATCGCCTACTGT 265235
Query 47470 T-----TCAGCTA-AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGA 47523
| || || | ||| ||| | ||| || || || || ||||| || |||
Sbjct 265234 TGGCACTCGGCAACAAG------AAGTTCTACAACGCCACCAACCCCTTCGACTTCATGG 265181
Query 47524 ACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| ||||||||||| | |||||||||||||| ||||||||||| || ||||| ||
Sbjct 265180 AGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 265126
>seq53
Length=642053
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | |||||| ||| || | ||| ||||||||| |||||
Sbjct 250146 TTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 250087
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || || |||||||||||| ||| || ||||| | |||
Sbjct 250086 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 250027
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| |||||| | |||||| |||| || | || ||||| || || || ||||| ||
Sbjct 250026 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 249968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499961929840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |