Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236545.1_202017-07- 28] 570 sequences; 31,958,638 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq526 116 8e-21 seq443 98.7 2e-15 >seq526 Length=1022908 Score = 116 bits (128), Expect = 8e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||| | |||||||||| ||||| ||||| ||| Sbjct 545002 GGTGAGGACCTCTGCAACTGCACATTCAACTTGGCATATGGTGCAAAGATCCTGCTCAAC 544943 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||||| | || |||||||| |||||||||| ||| | Sbjct 544942 CAGACACATCTCCGCCTCAAGCGTGGTCAGCGTTATGGTCTTCTCGGTCCCAACGGATCT 544883 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||||||||| |||| ||| | || ||||| ||||| ||| Sbjct 544882 GGCAAGACCACGCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGATTCCCTAA-GCA 544824 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| ||||| || ||||||||| | || ||| Sbjct 544823 GGACGAGGTTAAGACCGTGTACGTCGAGCACGACTTGGATTCC 544781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| || |||||||| || |||||||| || |||| ||||| Sbjct 544186 TCTCGTATTGCCGTCATTGGGCCAAATGGTGCCGGCAAGTCTACTCTCGTCAACGTCCTA 544127 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || |||| || ||| | |||| ||||| || || || Sbjct 544126 ACTGGTGAG-CTCATCCCGACTGCCGGCGACGTCTACCAGCACGAGAACATCCGTATCGC 544068 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||| || || | ||| || | | Sbjct 544067 CTACATCAAGCAGCACGCTTTCGCGCACATCGACCACCATCTCGAGAAGACCCCGTCCGA 544008 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 544007 ATACATCCAGTGGCGGT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 543957 Score = 96.9 bits (106), Expect = 7e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| | ||| | ||||||| ||||| |||||||| || | Sbjct 543630 CCAACTTCGGTCTGGACGCTGAGCTCGTGTCTCACTCCCGCATGAAGGGTCTTTCCGGCG 543571 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | || ||| ||| |||| |||||| | |||||| |||||||| Sbjct 543570 GTCAGCGTGTCAAGGTCGTGCTCGCCGCATGCTC-GTGGCAGCGTCCTCACTTGATCGTT 543512 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 543511 CTTGACGAGCCAACCAACTATCTCGACCGTGACTCACTGGGTGCTCT 543465 >seq443 Length=1095707 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||||||||| || ||||| || | ||||| ||| ||||||||||| | Sbjct 334713 TCATTGGGCCCAATGGTGCTGGCAAGTCGACGTTGATCAAGGTCTTGACTGGCGAGGTCA 334772 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || || || || ||| ||||||||| |||| || | ||| || |||| Sbjct 334773 TTCCCCAAGAAGGCAAGGTCGAGAAACATCCCAACTTGCGAATTGGCTACATCAAGCAGC 334832 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| || | ||| | |||| || || || | ||| || ||||| ||| ||||||||| Sbjct 334833 ACGCGCTCGAGCACGTGGAGATGCATCTCGAAAAGACGCCCAACCAGTACCTTCAGTGGC 334892 Query 280354 GCTATGC 280360 | ||||| Sbjct 334893 GATATGC 334899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829293579370