Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236545.1_202017-07-
28] 570 sequences; 31,958,638 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq559 275 6e-69
seq110 132 5e-26
seq526 113 5e-20
seq221 84.2 2e-11
>seq559
Length=875383
Score = 275 bits (304), Expect = 6e-69
Identities = 583/859 (68%), Gaps = 17/859 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || |||||||| || ||||| || || || || || || |
Sbjct 604996 CATGACACCAGCCTTCTGGTATTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 604937
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCC 132707
|| |||||| | ||| || || |||||||||| | ||||||| | |||| ||||
Sbjct 604936 CAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 604877
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| | | || || || | ||||| ||||| || |||||||| |||||| |
Sbjct 604876 GAGT--GCCAAC-AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGC 604820
Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | ||||| || ||| || || || || || | || |||||||| | ||
Sbjct 604819 GTTCATCCCCAGAAGCTTGCAT-GGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGA 604761
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || ||||||| ||| | || | ||| | ||||| | | || |||| ||
Sbjct 604760 CGGCCTCGGTGATGATGCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGA 604701
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
||| | ||| || ||||| |||| |||||| || | ||| ||||| ||||| ||
Sbjct 604700 ACAGAAGGCAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGA 604641
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| || | |||| |||||| || ||||| || ||||| || || || || ||| || |
Sbjct 604640 ATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAG 604581
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||||| ||||| ||||| || || || | || || | |||| || | | |
Sbjct 604580 AGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAATGTCGAGTTCT 604521
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126
|| | ||||| |||| |||||| || ||||| || ||| || || | ||||
Sbjct 604520 TGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGA 604461
Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGT 133184
|||| || |||| | | ||| || | || ||| | ||| || ||||||||
Sbjct 604460 TGGCATTGAACAG--GTATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAG 604403
Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244
||||| | || ||||| | ||||||||| ||| || |||||||| ||||| || ||
Sbjct 604402 GGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGC 604343
Query 133245 CTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303
||| | |||||| || |||| ||| |||||||| || || |||||||| ||||| |
Sbjct 604342 CTCCGGGATCTGCACCTCA-GAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCAT 604284
Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363
|| |||||||| || || || ||||| |||||| || |||| |||||| | |
Sbjct 604283 CGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC 604224
Query 133364 GCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420
||| ||||||| | ||||| ||||| || | |||||| | ||||| || || |
Sbjct 604223 GCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGG 604164
Query 133421 CCTCGGCTTTTTTGTACAT 133439
||||||| |||||||||||
Sbjct 604163 CCTCGGCCTTTTTGTACAT 604145
>seq110
Length=1833661
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| ||| |
Sbjct 1246037 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1246096
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || || | |||||
Sbjct 1246097 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 1246156
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || ||||| ||||| || || | || || || ||||||||||
Sbjct 1246157 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 1246216
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| || ||| |||| || || |||||||| |||
Sbjct 1246217 ATCCAGAAAGAATCGACTCTCCACTTGGTGCTTCGT 1246252
Score = 129 bits (142), Expect = 6e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| || ||||| |||| || || | ||
Sbjct 1246265 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAATCATCC 1246324
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || ||| |||| ||||| ||||| || || | |||||
Sbjct 1246325 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 1246383
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| || || || ||||||||
Sbjct 1246384 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGACTACAA 1246443
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| | || ||||| |||||||||||| | | || ||||
Sbjct 1246444 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTCCGTGGAGGCC 1246493
Score = 100 bits (110), Expect = 3e-16
Identities = 144/197 (73%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||| ||| |||| || ||| | |||||| | | | || | | ||
Sbjct 1245831 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATG--TGAA 1245888
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| || || ||||| | ||||| || || | |||| || ||
Sbjct 1245889 GAGCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTTGCAGG 1245948
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442
||||||||| || |||| |||||||| ||||||||||||||| ||||| ||| || |
Sbjct 1245949 CAAACAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAGAGC-ACTC 1246007
Query 38443 TGCATTTGGTGCTGCGT 38459
| ||| | || || |||
Sbjct 1246008 TCCATCTCGTCCTCCGT 1246024
>seq526
Length=1022908
Score = 113 bits (124), Expect = 5e-20
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
|||||||| || ||||| ||||| |||||||| |||| |||||| | | ||||| | |
Sbjct 770949 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 770890
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| |||||||| || | ||||| |||||
Sbjct 770889 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTT 770832
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || ||| |||| || | ||||||||| ||||||||||||||| |
Sbjct 770831 TGATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGA 770772
Query 38431 AGG 38433
|||
Sbjct 770771 AGG 770769
>seq221
Length=1251372
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||||||||| | ||||| ||||| | || | ||| ||||| ||||| ||
Sbjct 1048983 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 1048924
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|| | ||||||||| |||||||||||| || ||||| ||| || || || | || ||
Sbjct 1048923 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGC-ACCCTCCACCTCGTCCT 1048865
Query 38456 GCGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 1048864 CCGTCTGCGTGGTGG 1048850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169236268800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |