Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236545.1_202017-07- 28] 570 sequences; 31,958,638 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq110 114 3e-20 seq221 86.0 1e-11 >seq110 Length=1833661 Score = 114 bits (126), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || ||||| || || ||||| |||| ||||| | ||||| |||||||| Sbjct 1246240 GTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTG 1246181 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| || || || || || ||||| || || || || || ||||| || || || Sbjct 1246180 CTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 1246121 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||| || || ||||||| | | || || || || ||||| | ||||| || Sbjct 1246120 CGACTTGACATTGTCGATGGTGTCGCTGGAC--TCGACCTCGAGGGTGATGGTCTTGCCG 1246063 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || ||||| | ||||| Sbjct 1246062 GTGAGAGTCTTGACGAAGATCTGCAT 1246037 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||| ||| || || || ||||| |||| || || | || || ||| Sbjct 1246017 ACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCG 1245958 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| || || | ||||| ||||| || ||||||||||| ||||| || Sbjct 1245957 AGCTGTTTGCCTGCAAAAATCAAGCGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGG 1245898 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || |||||||| || || || || ||||||| ||||| Sbjct 1245897 ATCTTGCTCTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGGGTAATGGTCTTG 1245838 Query 195112 CCTGT 195116 || || Sbjct 1245837 CCGGT 1245833 >seq221 Length=1251372 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || ||||| ||||| |||| || || | ||||| ||| Sbjct 1048868 ACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1048927 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || ||||| || ||||| || || |||||| Sbjct 1048928 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCT 1048984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473497317190