Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236545.1_202017-07-
28] 570 sequences; 31,958,638 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq559 147 3e-29
seq537 143 3e-28
seq265 102 1e-15
seq176 98.7 1e-14
seq132 91.5 2e-12
>seq559
Length=875383
Score = 147 bits (162), Expect = 3e-29
Identities = 306/456 (67%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842
|| |||||||||| ||||| | | ||||||||||| ||||||||| | || |||
Sbjct 807098 GGGTCGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAACCATCG 807157
Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902
|||| | | || || ||| ||||||| || | | | |||| ||
Sbjct 807158 AACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGGGCATGC 807217
Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962
|||| | ||||| ||||| || || || ||||| ||||| ||| | |||
Sbjct 807218 CCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCCCAGCCT 807277
Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022
| | || ||||| |||||||||||||| || ||||||||||| |||||||||| || |
Sbjct 807278 ACAAAGAAGCCGTCCTCGAACTCAACGCCTCCGACGAGCGCGGAATCGACGTCGTACGAA 807337
Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082
| ||||||| | ||| || | | || || || |||| || || ||| |
Sbjct 807338 ACCGCATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGAAGATTG 807397
Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142
| || || ||||| || || || | || || | || |||||||| ||||| || |
Sbjct 807398 TAATTCTAGACGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCCGAACGA 807457
Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202
|||||| ||| || |||||| ||||| ||| | || |||||| ||| | |||
Sbjct 807458 TGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCCTGCAACCAATCGAACAAAATCA 807517
Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||||| | |||||| |||||||| || ||||||
Sbjct 807518 TCGAGCCTCTCCAATCGCGCTGCGCAATCTTGCGCT 807553
Score = 116 bits (128), Expect = 5e-20
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| |||||| |||||||||||||| | ||||| ||
Sbjct 604986 GCCTTCTGGTATTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 604927
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| | |
Sbjct 604926 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 604867
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || || ||||| || |||||||||| |||||||| || |
Sbjct 604866 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 604807
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || | || ||| ||||| | ||||||| |||||||||| ||||
Sbjct 604806 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 604747
Query 868931 AT 868932
||
Sbjct 604746 AT 604745
>seq537
Length=977565
Score = 143 bits (158), Expect = 3e-28
Identities = 143/183 (78%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || | ||| ||| | ||||| ||| | | || |||
Sbjct 493485 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 493543
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | |
Sbjct 493544 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 493603
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 493604 TCGCCAACATGATCAAGGGCAAGTCGCCCGAAGAGATCCGAAAGACGTTCAACATCCAGA 493663
Query 1592298 ACG 1592300
|||
Sbjct 493664 ACG 493666
>seq265
Length=359013
Score = 102 bits (112), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| ||||| || ||||| |||||| |||||| || ||||||| || |||
Sbjct 331778 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 331719
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| |||||||||||| | || ||| | ||||| ||||||||||| || || || ||
Sbjct 331718 CCTTGCTTTGACAAGTTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 331659
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201
|| || ||||| ||||| ||| || |||| |||
Sbjct 331658 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 331623
>seq176
Length=431326
Score = 98.7 bits (108), Expect = 1e-14
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || ||||| | | ||| || || | ||| |||||| | ||| |||
Sbjct 234187 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 234246
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| | ||||| ||||||||| |||| ||| || ||||| ||||
Sbjct 234247 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 234305
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
||||| ||||||||||||| ||||||| | ||| || || | | || ||| |||||||
Sbjct 234306 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 234364
Query 1627512 CCAGCGGCCG 1627521
|||| || ||
Sbjct 234365 CCAGAGGTCG 234374
>seq132
Length=462962
Score = 91.5 bits (100), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| ||||
Sbjct 353338 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 353279
Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049
|||||||||||||| | ||||||
Sbjct 353278 GATAGGCGCGCATGATGATGCAAAG 353254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107092423130690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |