Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236545.1_202017-07-
28] 570 sequences; 31,958,638 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq559 167 3e-36
seq176 116 5e-21
>seq559
Length=875383
Score = 167 bits (184), Expect = 3e-36
Identities = 551/850 (65%), Gaps = 10/850 (1%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| |||||||| ||||| || |||||||| || || || ||||| ||| || || ||
Sbjct 604983 TTCTGGTATTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATGTTC 604924
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| || || || || || || || || || || || | | | | |
Sbjct 604923 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAACAGT 604864
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | ||| || || ||||| |||||| | ||| | || ||||| || | ||
Sbjct 604863 AGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGAAGC 604804
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| ||| ||||| || || | ||||| | ||||| |||||||| || || ||
Sbjct 604803 TTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATGAT- 604745
Query 39566 GATGTT-ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
| | | || | | | |||| | | | ||| |||| | |||||||||
Sbjct 604744 GCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGAACAGAAGGCAGGCGAA 604685
Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684
||| || | ||||||||| | || | ||||| || |||||||| || | |||
Sbjct 604684 GTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGAATGTGAGCCCGGCCAT 604625
Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744
|||||||| || || ||||| || || ||||||||||||||||| |||||||| || ||
Sbjct 604624 GAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAGAGAAGAAGATACCCTC 604565
Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTT 39801
|| || |||||||||| || | || | | | | | | | |||||
Sbjct 604564 AACGGCGGCAAATGCAATGAGACGGAGGGCGAATGTCGAGTTCTTGTCAGAAATCCATCG 604505
Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| ||||| ||||| ||| | | || || || | || || ||||| || || |
Sbjct 604504 CAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGATGGCATTGAACAGGT- 604446
Query 39862 ATGTT-TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920
||||| | | || | | |||||||| || | || ||| | || || |
Sbjct 604445 ATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAGGGAATATGTCTCGGAGT 604386
Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980
||||||| || ||| ||||| || ||||| || |||| ||| || | || || ||||
Sbjct 604385 GGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGCACCT 604326
Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040
| || | || | || | | || || || || || ||||| ||||| || ||||
Sbjct 604325 CAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAGAATG 604266
Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAGTCATTGA 40097
| | || ||| || || || ||| ||| | | | || |||||||| | ||
Sbjct 604265 CGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCGTGGA 604206
Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157
||| || || | ||| | || ||||||||||| || || ||||| |||||||||||||
Sbjct 604205 GATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTGTACA 604146
Query 40158 TGTTCCATAT 40167
| | ||||||
Sbjct 604145 TTTGCCATAT 604136
>seq176
Length=431326
Score = 116 bits (128), Expect = 5e-21
Identities = 586/928 (63%), Gaps = 22/928 (2%)
Strand=Plus/Plus
Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336
|| || ||||| || || || ||||||| | | | || | || ||||| || ||
Sbjct 234762 GAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCAGTGCAC 234821
Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396
| |||| | ||||| || || ||||| | ||| || ||||| ||| |||||||
Sbjct 234822 AAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCC 234881
Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456
||||| ||||| || || || || || || |||| | |||| ||||| | ||| |
Sbjct 234882 TTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATATT 234941
Query 69457 ACCCTAGCATTTA-----TTACGGTC-TTGTAACGCTTCTCTTTTTCATATTGTGTATAT 69510
| |||| | | |||| | ||| ||||||| | |||| | ||
Sbjct 234942 TTCTGAGCACGAACCGTCTCACGGCCCTTGC----CTTCTCTCT--CATAACGCTCGTAC 234995
Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570
||| | ||| || || || | ||||| || ||||| ||||| || || |||||
Sbjct 234996 AGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTTGGGGCACATT 235055
Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630
| | ||| | | | | || || | |||||| |||||||||||||| |||||
Sbjct 235056 AGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCG 235115
Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690
|| | ||| | | | | |||||| ||||| || || ||| || | |||
Sbjct 235116 TAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAAC 235175
Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750
| ||| | || | ||||| || || || || || || | | || || || || ||
Sbjct 235176 TGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTG 235235
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| ||||| || | ||| | |||||||| || ||||||| ||||| || | || |||
Sbjct 235236 CCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCG 235295
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | || ||||| || ||| || ||| | || | || || || |
Sbjct 235296 TTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTGAACATGA 235355
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
||||| || || || || | || ||||| | ||||| || | || || || |||
Sbjct 235356 AGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGATA 235415
Query 69931 CCCTCTATGCTATCATCTATCATG----TTAAGAAGAAAACAGCTAGACATTTGATGATG 69986
|| || ||||| ||||| ||||| |||||| | ||||| || ||
Sbjct 235416 CCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG----CTGCGCCTG 235471
Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCA 70045
| || || ||| | || | ||| || || || || ||||| | || || | | |
Sbjct 235472 TGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTA 235531
Query 70046 GATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCA 70105
| || ||||| || || |||| ||| || || | ||||| || | || |||||||
Sbjct 235532 G-TTATATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACACGCA 235590
Query 70106 TCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTT 70165
| | ||| || || |||| || | || || ||| | | ||||||||| |
Sbjct 235591 TGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGAAGGTATGATCGCT 235650
Query 70166 CCAGAGTTTTAAACCCAAAATAGTTGTA 70193
||||||| || || || || || | |||
Sbjct 235651 CCAGAGTCTTGAAGCCGAAGTATTGGTA 235678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686903905774800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |