Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq564 131 2e-25
>seq564
Length=57547
Score = 131 bits (144), Expect = 2e-25
Identities = 625/981 (64%), Gaps = 32/981 (3%)
Strand=Plus/Minus
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
|||| || |||||||| || || || ||||||| | | | | || | || ||||||
Sbjct 7014 GCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCA 6955
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
||||| | |||| | ||||||||| || | ||| | || || ||||| |||
Sbjct 6954 GTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCG 6895
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|| ||||| || |||||||| || || || || || |||| | || | ||| || | |
Sbjct 6894 GCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATAC 6835
Query 53885 CAGAC-----GA-CACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTAT 53935
|| | || ||||| || | | | | | ||| |||||| || ||
Sbjct 6834 CATATTTTCTGAGCACGAACCGTC-TCACGG--------CCCTTGCCTTCTCTCTCATAA 6784
Query 53936 AGTGTATACAA-TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 53994
| |||| || || || |||||| || | |||| || ||||| ||||| |
Sbjct 6783 CGCTCGTACAGCTCCTTGAA-CTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTT 6725
Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054
|| ||||| | | ||| |||| | | || || | |||||||||||| |||||
Sbjct 6724 GGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAAT 6665
Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114
||| ||||| || | ||| | | | | ||| || ||||| ||||| |||
Sbjct 6664 CCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAG 6605
Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174
|| | |||| ||| | || | |||||||| || | ||| |||| | | | || ||
Sbjct 6604 GTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGG 6545
Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234
|| ||||| || ||||| || | ||| | || ||||| || || |||| | ||||||
Sbjct 6544 ACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGG 6485
Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294
| || ||| ||||||| || || || ||| || || || | || | || ||
Sbjct 6484 TACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTT 6425
Query 54295 ACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353
|| ||| ||||| || || || || | || ||||| | || ||| || | |
Sbjct 6424 GTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGG 6366
Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413
| || ||||| || || || || |||||| ||||| | | || ||| || |
Sbjct 6365 TGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAG---GATGCTA 6309
Query 54414 GGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469
| || || || || || ||| | || | || || ||||| || || || | ||
Sbjct 6308 GCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTC 6250
Query 54470 TCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 54528
|| | |||| ||||| |||||||| |||| || || || ||||| || ||
Sbjct 6249 AACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGAC 6191
Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588
|| |||||||| | ||| || || ||||| || | | |||| | ||| | || |
Sbjct 6190 AGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGAAG 6131
Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648
||| ||| |||| ||| || || || || || | ||| ||||| || || || |
Sbjct 6130 GTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGAC 6071
Query 54649 AATAACTGAGTTGAGTTTATC 54669
||| | ||||| || | |||
Sbjct 6070 AATGGCCGAGTTCAGCTCATC 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593695350083760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |