Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq564 87.8 4e-12 >seq564 Length=57547 Score = 87.8 bits (96), Expect = 4e-12 Identities = 237/350 (68%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| ||| || || |||| ||||||||||||| | | || || Sbjct 6107 TTCAAGACTCTGGAGCGATCATACCTTCTCAGAATTGATGGCAAGGTTGCCGAGAGACCG 6166 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC-GTGCT 248951 || || ||| | ||||| ||||||||||| |||||| ||| ||||| || ||| | | | Sbjct 6167 CAACAGATGATCATGCGTGTGGCTGTCGGCATTCACGGGGAAGACATTGA-AGCAGCGAT 6225 Query 248952 CGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 |||||| |||| | ||| || | | | | |||||||| | || || || |||| Sbjct 6226 CGAGACATACAACTACATGTCGTTGAAG-TACTTCACACATGCTTCGCCAACACTTTTCA 6284 Query 249011 ACGCCGGTACCGTCAACA--ATCAGCTGAGC-TCGTGCTTTCTTCTTGCCATGCAAGACG 249067 || |||||| | ||| ||||| ||| || ||||| | | |||||| | || | Sbjct 6285 GTGCTGGTACC--CCACAGGCGCAGCT-AGCATCCTGCTTCTTGGTGGCCATGAAGGATG 6341 Query 249068 ACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCG 249126 || | || || || || ||||| | | || | | | || | ||| || || ||| Sbjct 6342 ACAGCATTGATGGTATCTACGACAC-CCTCAAGATATGTGCCATGATCTCCAAGAACGCT 6400 Query 249127 GGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 ||||| || ||||| || ||||||| | || | || || ||||| Sbjct 6401 GGCGGTATTGGTCTTCATGTTCACAACATCAGGGCTACAGGCTCATACAT 6450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073717739255616