Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq564 116 7e-21 >seq564 Length=57547 Score = 116 bits (128), Expect = 7e-21 Identities = 541/844 (64%), Gaps = 16/844 (2%) Strand=Plus/Minus Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248 ||||||| |||||| || || || |||| | || ||||| | || ||||||||| Sbjct 7008 GAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCAGTGCAC 6949 Query 94249 AAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTATCC 94308 ||||| || ||||||| |||| | ||| | ||||| ||| | ||| || ||| Sbjct 6948 AAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCC 6889 Query 94309 TTAAAGCACACAT--AAGGTGTTCCAGTTTCGATACGTGCAGAATTAATTTGGTCGAATA 94366 || | || | || ||||||| || || ||| | | || ||| | ||| Sbjct 6888 TTGTA-CAGA-ATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATA 6831 Query 94367 ATGCACGTGCCTTCACCACCTCTTTACCTTTGCCTTCAGCCTCATATTTCTCGTACAACG 94426 | | || ||| ||| || |||||||| |||||| |||||||| | Sbjct 6830 TTTTCTGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCT 6771 Query 94427 CCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGG 94486 |||| ||||| || || | ||| || || || |||||||| |||| ||||||||| || | Sbjct 6770 CCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTTGGGGCACATTAGAG 6711 Query 94487 ACCAATTCTTCCCAGCC-TTC-ACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGG 94544 |||| | || | ||| || | || ||| |||||||| | | ||||| ||| Sbjct 6710 TCCAAGTG--CCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTA 6653 Query 94545 GAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTC 94604 ||| | ||| | || | | ||||| || || ||||| | ||| || || | Sbjct 6652 GAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTG 6593 Query 94605 CTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCC 94664 | | ||||| ||||| || |||||||| ||| ||| | ||||| || Sbjct 6592 CATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCC 6533 Query 94665 TCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGG 94724 |||||| ||| | ||| | ||| ||| | | || | | | ||||| | Sbjct 6532 ACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACC--G 6475 Query 94725 GTGG--GTACCACTCCATGACGA-AATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTG 94781 ||| || || | || || |||| ||| | ||||| | | |||| || Sbjct 6474 TTGGATGTGCCGTTTG-TGCCGCCAATGTATGAGCCTGTAGCCCTGATGTTGTGAACATG 6416 Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 | || | || ||||| |||||||||| || || ||| || || || || || Sbjct 6415 AAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGAT 6356 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGA 94900 ||| |||||||| ||||| | | | ||| | |||||| || | || || | |||| Sbjct 6355 ACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGG 6296 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 || ||| | | || ||||| || |||||||| || || || | | ||||||| | Sbjct 6295 G-GTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAGT 6237 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAA 95020 ||||| || || | | || |||||| |||||||||||||||||||||||||| | Sbjct 6236 TGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACACGCATGA 6177 Query 95021 TCAT 95024 |||| Sbjct 6176 TCAT 6173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989539154217835