Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq564 116 5e-21 >seq564 Length=57547 Score = 116 bits (128), Expect = 5e-21 Identities = 450/698 (64%), Gaps = 18/698 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| ||||| || || ||||| | | ||| || | | | || || | |||| Sbjct 6738 CCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATA 6679 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||||||| ||||| || | ||| | | | | || || ||||| Sbjct 6678 AAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCA 6619 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||| || | |||| ||| | || | |||||||| || | ||| ||| Sbjct 6618 TGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATG 6559 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 6558 GCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAG 6499 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| | |||||| | || ||| ||||||| || || || ||| || || || Sbjct 6498 ACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCT 6439 Query 72274 CTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 | || | || ||| || ||| ||||| || || || || | || ||||| | || Sbjct 6438 GTAGCCCTGATGTTGTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGC 6380 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| || | || || ||||| || || || || |||||| ||||| | | || Sbjct 6379 ACATATCTTGAGGGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAA 6320 Query 72393 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 ||| || | | || || || || || ||| | || | || || ||||| | Sbjct 6319 GCAG---GATGCTAGCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCAT 6264 Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCC 72504 | || || | || |||| |||| ||||| ||||| || |||| ||| || ||| Sbjct 6263 GTGTGAAGTACTTCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCC 6205 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | ||| || || || || |||||||| | ||| || || ||||| || | | |||| Sbjct 6204 CCGTGA---ATGCCGACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTG 6148 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 || ||| | | | ||| ||| |||| ||| || || || || || | ||| Sbjct 6147 CCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTG 6088 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 ||||| || || || | ||| |||| || || | ||| Sbjct 6087 AAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTCATC 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109527258120