Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq564 116 5e-21
>seq564
Length=57547
Score = 116 bits (128), Expect = 5e-21
Identities = 450/698 (64%), Gaps = 18/698 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| ||||| || || ||||| | | ||| || | | | || || | ||||
Sbjct 6738 CCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATA 6679
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| |||||||| ||||| || | ||| | | | | || || |||||
Sbjct 6678 AAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCA 6619
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| ||| || | |||| ||| | || | |||||||| || | ||| |||
Sbjct 6618 TGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATG 6559
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 6558 GCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAG 6499
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| | |||||| | || ||| ||||||| || || || ||| || || ||
Sbjct 6498 ACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCT 6439
Query 72274 CTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
| || | || ||| || ||| ||||| || || || || | || ||||| | ||
Sbjct 6438 GTAGCCCTGATGTTGTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGC 6380
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
||| || | || || ||||| || || || || |||||| ||||| | | ||
Sbjct 6379 ACATATCTTGAGGGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAA 6320
Query 72393 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448
||| || | | || || || || || ||| | || | || || ||||| |
Sbjct 6319 GCAG---GATGCTAGCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCAT 6264
Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCC 72504
| || || | || |||| |||| ||||| ||||| || |||| ||| || |||
Sbjct 6263 GTGTGAAGTACTTCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCC 6205
Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
| ||| || || || || |||||||| | ||| || || ||||| || | | ||||
Sbjct 6204 CCGTGA---ATGCCGACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTG 6148
Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624
|| ||| | | | ||| ||| |||| ||| || || || || || | |||
Sbjct 6147 CCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTG 6088
Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
||||| || || || | ||| |||| || || | |||
Sbjct 6087 AAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTCATC 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671109527258120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |