Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3470 235 8e-57 seq564 196 7e-45 >seq3470 Length=143118 Score = 235 bits (260), Expect = 8e-57 Identities = 579/864 (67%), Gaps = 33/864 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| ||||||| || ||||| | || ||| | |||||| Sbjct 117650 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 117591 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | || | | || || ||| || || || Sbjct 117590 TCGAAGGATCTCCACGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTCA 117531 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| |||||||| || |||||||| || || || || || Sbjct 117530 CACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAG-CG 117472 Query 125198 ATTCT-CTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| ||| || || || |||| ||||| ||||| ||||| ||||||| Sbjct 117471 CTTCAGCTCT-GAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 117413 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | |||||| | ||||| || | || || || || || | ||||| |||| || Sbjct 117412 TGGAGAACATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAA 117353 Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| || | | || || || || || ||||||| | || | || || | |||| Sbjct 117352 AGCAGCGAACATACCTGTTC---AATGCCATCGACAACATCCCATGCATCCGCAGGAAGG 117296 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || | |||| | | || ||||| |||| | || || | | |||| | | || | | Sbjct 117295 CTGACTGGGCGTTGCGATGGATTTCTGACAAGAACTCGACATTCGCCCTCCGTCTCATCG 117236 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 |||| |||||||| |||||||||||||| || || |||||| || ||||| ||||| | Sbjct 117235 CATTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 117176 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||| || || |||||| |||| || || | |||||| | || || || || |||| Sbjct 117175 AGAAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGG 117116 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGA 125612 || | ||| ||||| ||| || ||||| |||| ||||| | | || || Sbjct 117115 GCATGCACACAGACTTCGCCTGCCTTCTGTTCTCGC----ATCTGAAGAACAA--GCCGA 117062 Query 125613 TCCAG--CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 |||| | || || ||||| | ||||| ||||| | ||| || || |||| Sbjct 117061 ACCAGGCCCTTGTGCAGAGCATCA------TTACCGAGGCCGTCACGATTGAGCAGGAGT 117008 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAG 125729 | | || || | || || || | | || |||||| || | || |||| | Sbjct 117007 TCTTGACAGACGCTCTTCCATGCAAGCTTCTGGGGATGAAC-GCTGGCCTCATGTCACAA 116949 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---TTTAC 125786 ||||| || || || || ||||| ||||||| | | ||| ||||| | ||| Sbjct 116948 TACATTGAATTCGTCGCCGATCGCCTACTGT---TGGCACTCGGCAACAAGAAGTTCTAC 116892 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 ||||||| || ||||| || |||||| | ||| || || | || ||||||||||| Sbjct 116891 AACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTC 116832 Query 125847 TTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||||| || |||||||| Sbjct 116831 TTCGAGAAGCGTGTTGGCGAGTAC 116808 >seq564 Length=57547 Score = 196 bits (216), Expect = 7e-45 Identities = 389/568 (68%), Gaps = 6/568 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||||| ||| || || || |||||||| || | ||||| || || |||| Sbjct 6458 ACAAACGGCACATCCAACGGTCTTGTACCAATGCTACGAGTCTACAACAACACTG-CACG 6516 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || ||||| ||| | ||| ||||| | || || || Sbjct 6517 TTACGTTGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTTGCCATCTACCTTGAGCCGTG 6576 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||| | | || || || | ||||| ||| ||| ||||| | || Sbjct 6577 GCACGCAGACGTCATGCAGTTCATGGACCTTCGCAAGAACCATGGAAAGGAAGAAGTTCG 6636 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || ||||| || || |||||| | || ||| | || ||| |||| ||| | | Sbjct 6637 TGCGCGCGATTTGTTCTACGCTCTCTGGATTCCCGATCTCTTTATGCAGCGTGTCGAACA 6696 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| |||| |||||||||||| || | || |||||||| ||| || || Sbjct 6697 GAACGGCACTTGGACTCTAATGTGCCCCAACGAATGCCCTGGTCTGTCGGATGTCTACGG 6756 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAG 97164 || ||||| ||| |||| | || ||| ||| ||| | ||||||||| Sbjct 6757 TGACGAGTTCAAGGAGCTGTACGAGCGTTATGAGAGAGAAGGCAAGGGCCGTGAGACGGT 6816 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 ||| ||| | || | ||| | || || | ||| ||| ||||| || || || | Sbjct 6817 TCG-TGCTCAGAAAATATGGTATGCTATTCTCGAGGCGCAGACCGAGACCGGCACACCTT 6875 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATC 97283 |||||| |||||||| ||| || ||||| |||||||| | | ||| ||||||||| Sbjct 6876 TCATTCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAATCTT-GGCACCATC 6934 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 ||| |||| ||| ||||||| || || | |||||| | ||||||| ||| || || Sbjct 6935 AAGAGCTCTAATTTGTGCACTGAGATCATGGAGTACTCTGCTCCGGATGAGGTCGCTGTC 6994 Query 97344 TGCGTTCTGGCATCGGTCAATCTGCCCA 97371 ||| |||||| ||| | |||||||| Sbjct 6995 TGCAATCTGGCTTCGCTTGCTCTGCCCA 7022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741026435920120