Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1120 87.8 2e-12 seq3027 84.2 3e-11 seq2939 84.2 3e-11 >seq1120 Length=31007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 ||||||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 252 TACATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 310 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 311 GATTCCCATCACCCGCTT 328 >seq3027 Length=236980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 || |||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 236370 TATATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 236312 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 236311 GATTCCCATCACCCGCTT 236294 >seq2939 Length=251760 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 || |||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 251335 TATATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 251277 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 251276 GATTCCCATCACCCGCTT 251259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627940235964800