Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2971 131 1e-25
seq3038 93.3 4e-14
seq3060 84.2 2e-11
>seq2971
Length=246349
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || | ||||| || || |||| || ||||||||| | ||
Sbjct 200144 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAATCATCC 200203
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| ||| || |||||||||||||| || ||||| || ||
Sbjct 200204 GACACGATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 200263
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || |||||||| ||| | ||||| ||| || | || |||||||||
Sbjct 200264 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAAC 200323
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||||| | || || || |||| | || |||||
Sbjct 200324 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTCCGTGGAGG 200370
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | ||||| || || |||| || || || || ||| |
Sbjct 199916 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 199975
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || |||||||||||||| ||||| || ||
Sbjct 199976 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 200035
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| || || | ||||| ||||||
Sbjct 200036 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 200095
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || |||||||| ||
Sbjct 200096 ATCCAGAAAGAATCGAC 200112
>seq3038
Length=227906
Score = 93.3 bits (102), Expect = 4e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370
|||||||||||| |||||||| || || || || | || || |||||||| ||| | ||
Sbjct 26432 AGACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 26373
Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409
|||| ||||||| ||||||| ||||||||||| || ||
Sbjct 26372 GGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGA 26334
>seq3060
Length=213164
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || || | | ||| ||| | ||| || ||||
Sbjct 59363 ACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATCGACAATGTCAAGAGC 59304
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || ||||| || || || ||| | || || || || ||
Sbjct 59303 AAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCTGGAAAG 59244
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||||| |||||| |||||| ||||||| || ||||| || ||
Sbjct 59243 CAGTTGGAGGATGGTCGCACCCTCTCCGACTATAACATCCAGAA 59200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419709906706405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |