Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1884 105 1e-17 seq497 95.1 2e-14 >seq1884 Length=354220 Score = 105 bits (116), Expect = 1e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 |||||||||| ||||| ||||| ||| || | ||| |||||||||| | || Sbjct 178729 GCATATGGTGCAAAGATCCTGCTCAACCAGACACATCTCCGACTCAAGCGTGGTCAGCGT 178788 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 |||||||| |||||||||| ||| | || |||| ||| || ||||||||||| ||| Sbjct 178789 TATGGTCTTCTCGGTCCCAACGGATCTGGCAAGACCACGCTCATGCGCGCCATCAACAAC 178848 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556 | ||| | || ||||| || || ||| ||||| | ||| ||||| || |||||||| Sbjct 178849 GAGCAGGTCGAGGGATTCCCCAA-GCAGGACGAGGTTAAGACCGTGTACGTCGAGCACGA 178907 Query 279557 CATCGACTCC 279566 | | || ||| Sbjct 178908 CTTGGATTCC 178917 Score = 102 bits (112), Expect = 2e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| || |||||||| || |||||||| || |||| |||||| Sbjct 179512 TCTCGTATTGCCGTCATTGGGCCAAATGGTGCCGGCAAGTCTACTCTCGTCAACGTCCTG 179571 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || |||| || ||| | |||| ||||| || || || Sbjct 179572 ACTGGTGAG-CTCATCCCGACTGCCGGCGACGTCTACCAGCACGAGAACATCCGTATCGC 179630 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||| || || | ||| || | | Sbjct 179631 CTACATCAAGCAGCACGCTTTCGCGCACATCGACCACCATCTCGAGAAGACCCCGTCCGA 179690 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 179691 ATACATCCAGTGGCGGT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 179741 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| | ||| | ||||||| || || |||||||| || | Sbjct 180068 CCAACTTCGGTCTGGACGCTGAGCTCGTGTCTCACTCCCGTATGAAGGGTCTTTCCGGCG 180127 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | || ||| ||| |||| |||||| | |||||| |||||||| Sbjct 180128 GTCAGCGTGTCAAGGTCGTGCTCGCCGCATGCTC-GTGGCAGCGTCCTCACTTGATCGTT 180186 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 180187 CTTGACGAGCCAACCAACTATCTCGACCGTGACTCACTGGGTGCTCT 180233 >seq497 Length=63232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||||||||| || ||||| || | ||||| ||| ||||||||||| | Sbjct 22867 TCATTGGGCCCAATGGTGCTGGCAAGTCGACGTTGATCAAGGTCTTGACTGGCGAGGTCA 22926 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || || || || ||| ||||||||| |||| || | ||| || |||| Sbjct 22927 TTCCCCAAGAAGGCAAGGTCGAGAAACATCCCAACTTGCGAATTGGCTACATCAAGCAGC 22986 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| | | ||| | |||| || || || | ||| || ||||| ||| ||||||||| Sbjct 22987 ACGCGCTTGAGCACGTGGAGATGCATCTCGAAAAGACGCCCAACCAGTACCTTCAGTGGC 23046 Query 280354 GCTATGC 280360 | ||||| Sbjct 23047 GATATGC 23053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027790220684617