Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3470 116 4e-21
seq2971 96.9 3e-15
>seq3470
Length=143118
Score = 116 bits (128), Expect = 4e-21
Identities = 170/238 (71%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660
|||||| | | ||||| || | || || ||||||| || || | ||| || ||
Sbjct 117045 GAGCATCATTACCGAGGCCGTCACGATTGAGCAGGAGTTCTTGACAGACGCTCTTCCATG 116986
Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720
| |||| ||||| |||||||| ||||| | ||||| || || || || |||||
Sbjct 116985 CAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCGCCGATCG 116926
Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTA 52779
|| || || ||||| || | | |||| || |||||| ||| || || || || |
Sbjct 116925 CCTACTGTTGGCACTCGG-CAACAAGAAGTTCTACAACGCCACCAACCCCTTCGACTTCA 116867
Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | ||||||||||| | |||||||||||||| ||||||||||| || ||||||||
Sbjct 116866 TGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 116809
>seq2971
Length=246349
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || || || |||||||||||| || |||||| |||||||| || || || | |
Sbjct 200109 GATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCA 200050
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || || ||||| ||||| || || ||||| || ||||| ||| || || | |
Sbjct 200049 AAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACA 199990
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| | ||||| ||||||| || | || || || || ||||| ||
Sbjct 199989 TTG-TCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 199931
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 199930 GACGAAGATCTGCAT 199916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496240458998640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |