Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3470 116 4e-21 seq2971 96.9 3e-15 >seq3470 Length=143118 Score = 116 bits (128), Expect = 4e-21 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 |||||| | | ||||| || | || || ||||||| || || | ||| || || Sbjct 117045 GAGCATCATTACCGAGGCCGTCACGATTGAGCAGGAGTTCTTGACAGACGCTCTTCCATG 116986 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 | |||| ||||| |||||||| ||||| | ||||| || || || || ||||| Sbjct 116985 CAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCGCCGATCG 116926 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTA 52779 || || || ||||| || | | |||| || |||||| ||| || || || || | Sbjct 116925 CCTACTGTTGGCACTCGG-CAACAAGAAGTTCTACAACGCCACCAACCCCTTCGACTTCA 116867 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | ||||||||||| | |||||||||||||| ||||||||||| || |||||||| Sbjct 116866 TGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 116809 >seq2971 Length=246349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||||||| || |||||| |||||||| || || || | | Sbjct 200109 GATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCA 200050 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 200049 AAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACA 199990 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| | ||||| ||||||| || | || || || || ||||| || Sbjct 199989 TTG-TCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 199931 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 199930 GACGAAGATCTGCAT 199916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496240458998640