Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_011421.1 Length=132562 Score E Sequences producing significant alignments: (Bits) Value seq3027 86.0 5e-12 >seq3027 Length=236980 Score = 86.0 bits (94), Expect = 5e-12 Identities = 319/488 (65%), Gaps = 29/488 (6%) Strand=Plus/Plus Query 35780 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 35839 ||| |||||||| |||||| |||| || |||| | || || | ||||| || | ||| Sbjct 11556 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 11615 Query 35840 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAG-CTCG---TGTTTCA 35895 |||||| || ||| ||||| || | | || ||| | | || ||| || |||| Sbjct 11616 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTCTCCAGCTGCTTCA 11674 Query 35896 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 35955 ||| || || || |||||||| || |||| ||| |||| ||| ||| | Sbjct 11675 TTGATACCGTGGACGATTCCCTTGAGGGCATCTTCGATTCCAACACTGATGTAGC----G 11730 Query 35956 TGTCTAAGT----TTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAAC 36011 |||| || | || || || ||||| |||||| | |||||| || | | | | Sbjct 11731 CGTCTCAGCAAAATGGGCGGCGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCG-- 11788 Query 36012 AGTT---ACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGATTAAAGG 36067 ||| ||||||| ||| ||| || | ||| || || |||||||||||| Sbjct 11789 -GTTCGGACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATCCCTTGGATTCGCCA 11846 Query 36068 GCTTGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGT 36127 || | ||||| || || ||||||||||| || ||||||||||| || || || Sbjct 11847 ACTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGT 11906 Query 36128 TTACCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATAACG 36186 ||| || ||| | | || || || | ||| ||||| | | || || || || | Sbjct 11907 TTATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTCAACAATG 11965 Query 36187 GGGATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTT 36243 | || || || ||| || | ||||||||||| ||| | || | || ||||| | Sbjct 11966 GTGACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATCTGCCTGCCTGACCTGT 12022 Query 36244 TCATGGAG 36251 |||||||| Sbjct 12023 TCATGGAG 12030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424055319379811