Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_011421.1
Length=132562
Score E
Sequences producing significant alignments: (Bits) Value
seq3027 86.0 5e-12
>seq3027
Length=236980
Score = 86.0 bits (94), Expect = 5e-12
Identities = 319/488 (65%), Gaps = 29/488 (6%)
Strand=Plus/Plus
Query 35780 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 35839
||| |||||||| |||||| |||| || |||| | || || | ||||| || | |||
Sbjct 11556 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 11615
Query 35840 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAG-CTCG---TGTTTCA 35895
|||||| || ||| ||||| || | | || ||| | | || ||| || ||||
Sbjct 11616 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTCTCCAGCTGCTTCA 11674
Query 35896 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 35955
||| || || || |||||||| || |||| ||| |||| ||| ||| |
Sbjct 11675 TTGATACCGTGGACGATTCCCTTGAGGGCATCTTCGATTCCAACACTGATGTAGC----G 11730
Query 35956 TGTCTAAGT----TTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAAC 36011
|||| || | || || || ||||| |||||| | |||||| || | | | |
Sbjct 11731 CGTCTCAGCAAAATGGGCGGCGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCG-- 11788
Query 36012 AGTT---ACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGATTAAAGG 36067
||| ||||||| ||| ||| || | ||| || || ||||||||||||
Sbjct 11789 -GTTCGGACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATCCCTTGGATTCGCCA 11846
Query 36068 GCTTGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGT 36127
|| | ||||| || || ||||||||||| || ||||||||||| || || ||
Sbjct 11847 ACTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGT 11906
Query 36128 TTACCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATAACG 36186
||| || ||| | | || || || | ||| ||||| | | || || || || |
Sbjct 11907 TTATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTCAACAATG 11965
Query 36187 GGGATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTT 36243
| || || || ||| || | ||||||||||| ||| | || | || ||||| |
Sbjct 11966 GTGACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATCTGCCTGCCTGACCTGT 12022
Query 36244 TCATGGAG 36251
||||||||
Sbjct 12023 TCATGGAG 12030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424055319379811
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |