Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq1140 98.7 1e-15
seq2939 95.1 2e-14
seq3027 87.8 2e-12
seq1440 84.2 3e-11
>seq1140
Length=804
Score = 98.7 bits (108), Expect = 1e-15
Identities = 118/157 (75%), Gaps = 9/157 (6%)
Strand=Plus/Minus
Query 31937 GGACTTGAACCTCCACGTCGCAAGGACACTGGAACCTAAACCCAGCGCGTCTACCAATTC 31996
||||||||||| ||||||| || ||| || || ||||| | || |||||| |||||||
Sbjct 706 GGACTTGAACCCCCACGTC--AAAGACGCTAGATCCTAAGTCTAGTGCGTCTGCCAATTC 649
Query 31997 CGCCATAC-CG-----ACTGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAG 32050
||||| || || | || || ||| | ||| |||||||| |||| ||| |||
Sbjct 648 CGCCACACGCGCATATAAAGGTGAGTCATGAAGGGCTCGAACCTTCGACACCCTGATTAA 589
Query 32051 AAGGCAGTTGCTCTATCCAGCTGAGCTATTGAGTCAT 32087
||| ||| ||||||| ||| |||||||| ||| ||||
Sbjct 588 AAGTCAGGTGCTCTA-CCAACTGAGCTAATGACTCAT 553
>seq2939
Length=251760
Score = 95.1 bits (104), Expect = 2e-14
Identities = 116/155 (75%), Gaps = 9/155 (6%)
Strand=Plus/Plus
Query 31937 GGACTTGAACCTCCACGTCGCAAGGACACTGGAACCTAAACCCAGCGCGTCTACCAATTC 31996
||||||||||| ||||||| || ||| || || ||||| | || |||||| |||||||
Sbjct 251609 GGACTTGAACCCCCACGTC--AAAGACGCTAGATCCTAAGTCTAGTGCGTCTGCCAATTC 251666
Query 31997 CGCCATAC-CG-----ACTGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAG 32050
||||| || || ||| || ||| | ||| |||||||| |||| ||| |||
Sbjct 251667 CGCCACACGCGCATATGATGGTGAGTCATGAAGGGCTCGAACCTTCGACACCCTGATTAA 251726
Query 32051 AAGGCAGTTGCTCTATCCAGCTGAGCTATTGAGTC 32085
||| ||| ||||||| ||| |||||||| ||| ||
Sbjct 251727 AAGTCAGGTGCTCTA-CCAACTGAGCTAATGACTC 251760
>seq3027
Length=236980
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/163 (73%), Gaps = 11/163 (7%)
Strand=Plus/Plus
Query 31934 AGAGGACTTGAACCTCCACGTCGCA-AGGACACTGGAACCTAAACCCAGCGCGTCTACCA 31992
|||||||| ||||||||||| | || ||| | |||| |||| |||||||| |||
Sbjct 236642 AGAGGACTCGAACCTCCACGGGGGTTAGCCCACACGGACCTGAACCGTGCGCGTCTGCCA 236701
Query 31993 ATTCCGCCA-TACCG--------ACTGGCGACTCAAGTAGGATTCGAACCTACGACCGAC 32043
||||||||| |||| | ||| || ||| | ||| |||||||| |||| |
Sbjct 236702 ATTCCGCCACGACCGCAAAATATAATGGTGAGTCATGAAGGGCTCGAACCTTCGACACCC 236761
Query 32044 TGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGAGTCA 32086
|| ||| ||| ||| ||||||| ||| |||||||| ||| |||
Sbjct 236762 TGATTAAAAGTCAGGTGCTCTA-CCAACTGAGCTAATGACTCA 236803
>seq1440
Length=381215
Score = 84.2 bits (92), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082
||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||
Sbjct 321187 GGATTCGAACCCCCGACCGACGGCTTAGAAGGCCGTTGCTCTATCCTGCTGAGCTACTGA 321128
Query 32083 GTCA 32086
| ||
Sbjct 321127 GACA 321124
Score = 84.2 bits (92), Expect = 3e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082
||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 328789 GGATTCGAACCCCCGACCGACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTACTGA 328848
Query 32083 GTCATG 32088
| ||||
Sbjct 328849 GACATG 328854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622097294307280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |