Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2971 140 4e-28 seq3060 123 3e-23 seq3038 107 2e-18 >seq2971 Length=246349 Score = 140 bits (154), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| |||||| | | ||||| ||||| |||| || |||||| ||||| ||||| Sbjct 200376 TATTGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAA 200317 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || || || |||| || ||||||||||||||||| || | ||||||||||| Sbjct 200316 TCCGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCC 200257 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||||| ||| | | | ||||||| || Sbjct 200256 GGTGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATCGTGTCGGATGA 200198 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || | ||||| || ||||| || || || || || || |||||||| Sbjct 200197 TTCCACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 200144 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| ||||| || | || |||||||||||||| || || Sbjct 200106 TCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAA 200047 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||| | || | | |||||||||| ||||||| ||||| | Sbjct 200046 ATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTG 199987 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| || || || || | |||||||| ||||| || || || || || Sbjct 199986 TCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACG 199927 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 199926 AAGATCTGCAT 199916 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | || |||||||| ||||| ||||||||||| || ||||| |||| ||| Sbjct 199896 ACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCG 199837 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||||||| |||||||| | || | || ||||| ||| | Sbjct 199836 AGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGG 199777 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | | |||||| ||| || || || | || ||||| ||| Sbjct 199776 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGACTCAACCTCGAGGGTAATGGTCTTG 199717 Query 46565 CCCGT 46569 || || Sbjct 199716 CCGGT 199712 >seq3060 Length=213164 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| || |||||||| || ||||| | || || | |||||| || ||||| | Sbjct 59198 CCTTCTGGATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGA 59257 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | | |||||||||| |||||| |||||| | Sbjct 59258 TCAAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 59317 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||||||| || || || | ||||||||| ||||| || || || || || | Sbjct 59318 CGATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGA 59377 Query 46584 AGATTTGC 46591 || | ||| Sbjct 59378 AGCTGTGC 59385 >seq3038 Length=227906 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| || ||||| | || ||||||||||||||| Sbjct 26328 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 26387 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||| ||||||||||||||||| | || | | ||||||||| Sbjct 26388 GCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTC 26431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213409397240